miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28329 3' -56.1 NC_005905.1 + 21734 0.68 0.653656
Target:  5'- --cUUGGUUCAAGCCGGcCUAGAc-- -3'
miRNA:   3'- gccAGCCGAGUUCGGCCaGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 19740 0.69 0.610877
Target:  5'- --cUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gccAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11403 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11338 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11273 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11208 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 19913 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 19518 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11468 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11792 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11922 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11533 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11857 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11727 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11598 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 11662 0.69 0.589557
Target:  5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 20077 0.7 0.547382
Target:  5'- aGGcuagcUUGGCcCAAGCCGGUCUGGAc-- -3'
miRNA:   3'- gCC-----AGCCGaGUUCGGCCAGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 9055 0.7 0.516384
Target:  5'- aGcUUGGCUCAAGCCGGcCUGGAc-- -3'
miRNA:   3'- gCcAGCCGAGUUCGGCCaGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 17032 0.72 0.409946
Target:  5'- --cUCGGCUCAAGCCGGgCUGGAc-- -3'
miRNA:   3'- gccAGCCGAGUUCGGCCaGGUCUaaa -5'
28329 3' -56.1 NC_005905.1 + 49384 0.86 0.050179
Target:  5'- cCGGUaGGCUCAAGCCGGUCUAGAc-- -3'
miRNA:   3'- -GCCAgCCGAGUUCGGCCAGGUCUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.