Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28329 | 3' | -56.1 | NC_005905.1 | + | 21734 | 0.68 | 0.653656 |
Target: 5'- --cUUGGUUCAAGCCGGcCUAGAc-- -3' miRNA: 3'- gccAGCCGAGUUCGGCCaGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 19740 | 0.69 | 0.610877 |
Target: 5'- --cUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gccAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11403 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11338 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11273 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11208 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 19913 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 19518 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11468 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11792 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11922 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11533 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11857 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11727 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11598 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 11662 | 0.69 | 0.589557 |
Target: 5'- aGcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCcAGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 20077 | 0.7 | 0.547382 |
Target: 5'- aGGcuagcUUGGCcCAAGCCGGUCUGGAc-- -3' miRNA: 3'- gCC-----AGCCGaGUUCGGCCAGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 9055 | 0.7 | 0.516384 |
Target: 5'- aGcUUGGCUCAAGCCGGcCUGGAc-- -3' miRNA: 3'- gCcAGCCGAGUUCGGCCaGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 17032 | 0.72 | 0.409946 |
Target: 5'- --cUCGGCUCAAGCCGGgCUGGAc-- -3' miRNA: 3'- gccAGCCGAGUUCGGCCaGGUCUaaa -5' |
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28329 | 3' | -56.1 | NC_005905.1 | + | 49384 | 0.86 | 0.050179 |
Target: 5'- cCGGUaGGCUCAAGCCGGUCUAGAc-- -3' miRNA: 3'- -GCCAgCCGAGUUCGGCCAGGUCUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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