Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28329 | 5' | -55.9 | NC_005905.1 | + | 49377 | 1.1 | 0.001399 |
Target: 5'- cCGAAACCCGGUAGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAUCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 48928 | 0.96 | 0.012161 |
Target: 5'- cCGAAGCUCGGUcGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49288 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49198 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49153 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49108 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49063 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49018 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 48973 | 0.95 | 0.014447 |
Target: 5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49333 | 0.94 | 0.016203 |
Target: 5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCc -3' miRNA: 3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 49244 | 0.94 | 0.01817 |
Target: 5'- uGAGGCUCGGUcGGCUCAAGCCGGUCu -3' miRNA: 3'- gCUUUGGGCCAuCCGAGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 9063 | 0.71 | 0.513329 |
Target: 5'- uCGAAGCUagcuuGGCUCAAGCCGGcCu -3' miRNA: 3'- -GCUUUGGgccauCCGAGUUCGGCCaG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 21949 | 0.71 | 0.533745 |
Target: 5'- uCGAAGCUacuu-GGCUCAAGCCGGcCu -3' miRNA: 3'- -GCUUUGGgccauCCGAGUUCGGCCaG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 20064 | 0.7 | 0.56488 |
Target: 5'- uCGAGAUuuGucgAGGCUagcuuggccCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGggCca-UCCGA---------GUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 19510 | 0.7 | 0.585901 |
Target: 5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 19730 | 0.7 | 0.585901 |
Target: 5'- uCGAAGCUaacuuGGCcCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 19905 | 0.7 | 0.585901 |
Target: 5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 11216 | 0.7 | 0.585901 |
Target: 5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 11411 | 0.7 | 0.585901 |
Target: 5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5' |
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28329 | 5' | -55.9 | NC_005905.1 | + | 11346 | 0.7 | 0.585901 |
Target: 5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3' miRNA: 3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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