miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28329 5' -55.9 NC_005905.1 + 49377 1.1 0.001399
Target:  5'- cCGAAACCCGGUAGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAUCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 21949 0.71 0.533745
Target:  5'- uCGAAGCUacuu-GGCUCAAGCCGGcCu -3'
miRNA:   3'- -GCUUUGGgccauCCGAGUUCGGCCaG- -5'
28329 5' -55.9 NC_005905.1 + 20064 0.7 0.56488
Target:  5'- uCGAGAUuuGucgAGGCUagcuuggccCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGggCca-UCCGA---------GUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 19510 0.7 0.585901
Target:  5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 19730 0.7 0.585901
Target:  5'- uCGAAGCUaacuuGGCcCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 19905 0.7 0.585901
Target:  5'- uCGAAGCUagcuuGGCcCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGgccauCCGaGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 21620 0.67 0.722996
Target:  5'- uCGuGACCCaccucaacGGCUCAAGCCGGcCu -3'
miRNA:   3'- -GCuUUGGGccau----CCGAGUUCGGCCaG- -5'
28329 5' -55.9 NC_005905.1 + 21724 0.67 0.763321
Target:  5'- uCGAAGCUaacuuGGUUCAAGCCGGcCu -3'
miRNA:   3'- -GCUUUGGgccauCCGAGUUCGGCCaG- -5'
28329 5' -55.9 NC_005905.1 + 22182 0.66 0.801638
Target:  5'- -cAAACCauGuUGGGC-CAAGCCGGUUu -3'
miRNA:   3'- gcUUUGGgcC-AUCCGaGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49244 0.94 0.01817
Target:  5'- uGAGGCUCGGUcGGCUCAAGCCGGUCu -3'
miRNA:   3'- gCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49333 0.94 0.016203
Target:  5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCc -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 48928 0.96 0.012161
Target:  5'- cCGAAGCUCGGUcGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 48973 0.95 0.014447
Target:  5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49018 0.95 0.014447
Target:  5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49063 0.95 0.014447
Target:  5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49108 0.95 0.014447
Target:  5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49153 0.95 0.014447
Target:  5'- uCGAGGCUCGGUuGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49198 0.95 0.014447
Target:  5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 49288 0.95 0.014447
Target:  5'- uCGAGGCUCGGUcGGCUCAAGCCGGUCu -3'
miRNA:   3'- -GCUUUGGGCCAuCCGAGUUCGGCCAG- -5'
28329 5' -55.9 NC_005905.1 + 9063 0.71 0.513329
Target:  5'- uCGAAGCUagcuuGGCUCAAGCCGGcCu -3'
miRNA:   3'- -GCUUUGGgccauCCGAGUUCGGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.