Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28341 | 5' | -55.7 | NC_005946.1 | + | 26973 | 0.67 | 0.841118 |
Target: 5'- gCCuguGGGCCUUGgUgGCGUCAGuGuUCCa -3' miRNA: 3'- -GGu--CCUGGGACaGgUGCAGUCuC-AGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 94878 | 0.66 | 0.86486 |
Target: 5'- cCCAGGACCCcuaUGgucaagCCACcauUCAGGaUCCc -3' miRNA: 3'- -GGUCCUGGG---ACa-----GGUGc--AGUCUcAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 52090 | 0.66 | 0.86486 |
Target: 5'- -gGGGAgaCUGUCuCACGuUCAGAGUUUu -3' miRNA: 3'- ggUCCUggGACAG-GUGC-AGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 42150 | 0.66 | 0.87963 |
Target: 5'- aCgGGGACCgUcugcgcGUCCAUGUCGGc-UCCa -3' miRNA: 3'- -GgUCCUGGgA------CAGGUGCAGUCucAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 39954 | 0.66 | 0.886679 |
Target: 5'- -uGGGGCUCugcgaUGUCC-CGUUGGGGUUCu -3' miRNA: 3'- ggUCCUGGG-----ACAGGuGCAGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 58188 | 0.66 | 0.8935 |
Target: 5'- -gAGGACCCccuacaacacUGUCCACGaUCAc-GUCUa -3' miRNA: 3'- ggUCCUGGG----------ACAGGUGC-AGUcuCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 28545 | 0.66 | 0.8935 |
Target: 5'- -gGGGAcgacccucaCCCUGUuccauguggCCugGUCGGcGUCCu -3' miRNA: 3'- ggUCCU---------GGGACA---------GGugCAGUCuCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 40331 | 0.66 | 0.8935 |
Target: 5'- gCCGGGACCUUGUgguacaggaCCugauCGUCcuuGUCCc -3' miRNA: 3'- -GGUCCUGGGACA---------GGu---GCAGucuCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 67887 | 0.66 | 0.87963 |
Target: 5'- gCCAGGACC---UCCGCcUCGGGGUa- -3' miRNA: 3'- -GGUCCUGGgacAGGUGcAGUCUCAgg -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 64370 | 0.67 | 0.844389 |
Target: 5'- -uGGGGCCCgugGUCCcacccuuuaggaaagACGUCGcaaAGUCCu -3' miRNA: 3'- ggUCCUGGGa--CAGG---------------UGCAGUc--UCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 42194 | 0.66 | 0.854798 |
Target: 5'- gUCuGGACCCUGgggCCAC-UCGGGccacucgggcccacGUCCc -3' miRNA: 3'- -GGuCCUGGGACa--GGUGcAGUCU--------------CAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 63542 | 0.67 | 0.841118 |
Target: 5'- gCAGGACCCcaggGUgaggguucUCACGUCGGccgcauAGUCUg -3' miRNA: 3'- gGUCCUGGGa---CA--------GGUGCAGUC------UCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 16382 | 0.67 | 0.832807 |
Target: 5'- gCAGGGgCCagGUCUuuggaguggcguGCGUCAGAGgaaCCg -3' miRNA: 3'- gGUCCUgGGa-CAGG------------UGCAGUCUCa--GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 69621 | 0.67 | 0.832807 |
Target: 5'- cCCAGGGguCCCUGUCCucca-GGAGggCCu -3' miRNA: 3'- -GGUCCU--GGGACAGGugcagUCUCa-GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 76724 | 0.67 | 0.819126 |
Target: 5'- -aGGGGCCCcGcgggcgcaggcggagUCCACGUCcaccugguGGGUCCa -3' miRNA: 3'- ggUCCUGGGaC---------------AGGUGCAGu-------CUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 23062 | 0.67 | 0.812116 |
Target: 5'- -gAGGACCCggaggucccggagGUCCGCGagacccCAGAGggCCg -3' miRNA: 3'- ggUCCUGGGa------------CAGGUGCa-----GUCUCa-GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 13009 | 0.68 | 0.797781 |
Target: 5'- uCCAGGAaCCUGUaCC-CuUCAGAGUUUg -3' miRNA: 3'- -GGUCCUgGGACA-GGuGcAGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 82903 | 0.68 | 0.792303 |
Target: 5'- uUCAGGGCCCcGgagccagucgCCACGggacacucgcugucCAGGGUCCc -3' miRNA: 3'- -GGUCCUGGGaCa---------GGUGCa-------------GUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 35777 | 0.68 | 0.788621 |
Target: 5'- -gAGGACCCUGaUCCugGcccUCGuauAGUCCc -3' miRNA: 3'- ggUCCUGGGAC-AGGugC---AGUc--UCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 47779 | 0.68 | 0.775558 |
Target: 5'- uUguGGGCCCUguugagcucgucgGUCUgcaugacgugagagGCGUCAGGGUCa -3' miRNA: 3'- -GguCCUGGGA-------------CAGG--------------UGCAGUCUCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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