miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28341 5' -55.7 NC_005946.1 + 2407 0.68 0.77367
Target:  5'- cCCAGG-CCCagguggaccaguuugUGUCCAUGUUcggcGAGUCUc -3'
miRNA:   3'- -GGUCCuGGG---------------ACAGGUGCAGu---CUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 4351 0.69 0.730966
Target:  5'- -gAGGACa-UGUCUACGUUGGAGggCCa -3'
miRNA:   3'- ggUCCUGggACAGGUGCAGUCUCa-GG- -5'
28341 5' -55.7 NC_005946.1 + 8129 1.13 0.001378
Target:  5'- cCCAGGACCCUGUCCACGUCAGAGUCCc -3'
miRNA:   3'- -GGUCCUGGGACAGGUGCAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 9595 0.69 0.730966
Target:  5'- uCCAGGAUCUUGgagcacaCCGCGUCGGccaCCa -3'
miRNA:   3'- -GGUCCUGGGACa------GGUGCAGUCucaGG- -5'
28341 5' -55.7 NC_005946.1 + 13009 0.68 0.797781
Target:  5'- uCCAGGAaCCUGUaCC-CuUCAGAGUUUg -3'
miRNA:   3'- -GGUCCUgGGACA-GGuGcAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 16292 0.72 0.577368
Target:  5'- aCUAcGACUCUGUCCACGU---AGUCCa -3'
miRNA:   3'- -GGUcCUGGGACAGGUGCAgucUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 16382 0.67 0.832807
Target:  5'- gCAGGGgCCagGUCUuuggaguggcguGCGUCAGAGgaaCCg -3'
miRNA:   3'- gGUCCUgGGa-CAGG------------UGCAGUCUCa--GG- -5'
28341 5' -55.7 NC_005946.1 + 17227 0.66 0.87963
Target:  5'- gCCAGGGggCUGUaCCACGUCauacuGGAGaaggCCa -3'
miRNA:   3'- -GGUCCUggGACA-GGUGCAG-----UCUCa---GG- -5'
28341 5' -55.7 NC_005946.1 + 20906 0.73 0.51693
Target:  5'- cCCAGGagGCCCUGUCgGCcUCAGAcGcCCu -3'
miRNA:   3'- -GGUCC--UGGGACAGgUGcAGUCU-CaGG- -5'
28341 5' -55.7 NC_005946.1 + 23062 0.67 0.812116
Target:  5'- -gAGGACCCggaggucccggagGUCCGCGagacccCAGAGggCCg -3'
miRNA:   3'- ggUCCUGGGa------------CAGGUGCa-----GUCUCa-GG- -5'
28341 5' -55.7 NC_005946.1 + 23725 0.72 0.536832
Target:  5'- -gAGGACCCUGUCCAgGcUAaAGUCUg -3'
miRNA:   3'- ggUCCUGGGACAGGUgCaGUcUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 26324 0.69 0.740849
Target:  5'- gCAGu-CCUUGUCCaccACGUCAaAGUCCa -3'
miRNA:   3'- gGUCcuGGGACAGG---UGCAGUcUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 26973 0.67 0.841118
Target:  5'- gCCuguGGGCCUUGgUgGCGUCAGuGuUCCa -3'
miRNA:   3'- -GGu--CCUGGGACaGgUGCAGUCuC-AGG- -5'
28341 5' -55.7 NC_005946.1 + 28277 0.69 0.740849
Target:  5'- -gAGGGCUuuCUG-CC-CGUCAGGGUCUg -3'
miRNA:   3'- ggUCCUGG--GACaGGuGCAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 28545 0.66 0.8935
Target:  5'- -gGGGAcgacccucaCCCUGUuccauguggCCugGUCGGcGUCCu -3'
miRNA:   3'- ggUCCU---------GGGACA---------GGugCAGUCuCAGG- -5'
28341 5' -55.7 NC_005946.1 + 35777 0.68 0.788621
Target:  5'- -gAGGACCCUGaUCCugGcccUCGuauAGUCCc -3'
miRNA:   3'- ggUCCUGGGAC-AGGugC---AGUc--UCAGG- -5'
28341 5' -55.7 NC_005946.1 + 35992 0.75 0.396427
Target:  5'- uCCAGGGCCUcggcGUCCAUGUCAG-G-CCu -3'
miRNA:   3'- -GGUCCUGGGa---CAGGUGCAGUCuCaGG- -5'
28341 5' -55.7 NC_005946.1 + 39954 0.66 0.886679
Target:  5'- -uGGGGCUCugcgaUGUCC-CGUUGGGGUUCu -3'
miRNA:   3'- ggUCCUGGG-----ACAGGuGCAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 40331 0.66 0.8935
Target:  5'- gCCGGGACCUUGUgguacaggaCCugauCGUCcuuGUCCc -3'
miRNA:   3'- -GGUCCUGGGACA---------GGu---GCAGucuCAGG- -5'
28341 5' -55.7 NC_005946.1 + 41410 0.74 0.465749
Target:  5'- cCCGGcGGaccguccucuccguCCCUGcCCcCGUCAGGGUCCg -3'
miRNA:   3'- -GGUC-CU--------------GGGACaGGuGCAGUCUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.