Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28341 | 5' | -55.7 | NC_005946.1 | + | 2407 | 0.68 | 0.77367 |
Target: 5'- cCCAGG-CCCagguggaccaguuugUGUCCAUGUUcggcGAGUCUc -3' miRNA: 3'- -GGUCCuGGG---------------ACAGGUGCAGu---CUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 4351 | 0.69 | 0.730966 |
Target: 5'- -gAGGACa-UGUCUACGUUGGAGggCCa -3' miRNA: 3'- ggUCCUGggACAGGUGCAGUCUCa-GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 8129 | 1.13 | 0.001378 |
Target: 5'- cCCAGGACCCUGUCCACGUCAGAGUCCc -3' miRNA: 3'- -GGUCCUGGGACAGGUGCAGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 9595 | 0.69 | 0.730966 |
Target: 5'- uCCAGGAUCUUGgagcacaCCGCGUCGGccaCCa -3' miRNA: 3'- -GGUCCUGGGACa------GGUGCAGUCucaGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 13009 | 0.68 | 0.797781 |
Target: 5'- uCCAGGAaCCUGUaCC-CuUCAGAGUUUg -3' miRNA: 3'- -GGUCCUgGGACA-GGuGcAGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 16292 | 0.72 | 0.577368 |
Target: 5'- aCUAcGACUCUGUCCACGU---AGUCCa -3' miRNA: 3'- -GGUcCUGGGACAGGUGCAgucUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 16382 | 0.67 | 0.832807 |
Target: 5'- gCAGGGgCCagGUCUuuggaguggcguGCGUCAGAGgaaCCg -3' miRNA: 3'- gGUCCUgGGa-CAGG------------UGCAGUCUCa--GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 17227 | 0.66 | 0.87963 |
Target: 5'- gCCAGGGggCUGUaCCACGUCauacuGGAGaaggCCa -3' miRNA: 3'- -GGUCCUggGACA-GGUGCAG-----UCUCa---GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 20906 | 0.73 | 0.51693 |
Target: 5'- cCCAGGagGCCCUGUCgGCcUCAGAcGcCCu -3' miRNA: 3'- -GGUCC--UGGGACAGgUGcAGUCU-CaGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 23062 | 0.67 | 0.812116 |
Target: 5'- -gAGGACCCggaggucccggagGUCCGCGagacccCAGAGggCCg -3' miRNA: 3'- ggUCCUGGGa------------CAGGUGCa-----GUCUCa-GG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 23725 | 0.72 | 0.536832 |
Target: 5'- -gAGGACCCUGUCCAgGcUAaAGUCUg -3' miRNA: 3'- ggUCCUGGGACAGGUgCaGUcUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 26324 | 0.69 | 0.740849 |
Target: 5'- gCAGu-CCUUGUCCaccACGUCAaAGUCCa -3' miRNA: 3'- gGUCcuGGGACAGG---UGCAGUcUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 26973 | 0.67 | 0.841118 |
Target: 5'- gCCuguGGGCCUUGgUgGCGUCAGuGuUCCa -3' miRNA: 3'- -GGu--CCUGGGACaGgUGCAGUCuC-AGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 28277 | 0.69 | 0.740849 |
Target: 5'- -gAGGGCUuuCUG-CC-CGUCAGGGUCUg -3' miRNA: 3'- ggUCCUGG--GACaGGuGCAGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 28545 | 0.66 | 0.8935 |
Target: 5'- -gGGGAcgacccucaCCCUGUuccauguggCCugGUCGGcGUCCu -3' miRNA: 3'- ggUCCU---------GGGACA---------GGugCAGUCuCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 35777 | 0.68 | 0.788621 |
Target: 5'- -gAGGACCCUGaUCCugGcccUCGuauAGUCCc -3' miRNA: 3'- ggUCCUGGGAC-AGGugC---AGUc--UCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 35992 | 0.75 | 0.396427 |
Target: 5'- uCCAGGGCCUcggcGUCCAUGUCAG-G-CCu -3' miRNA: 3'- -GGUCCUGGGa---CAGGUGCAGUCuCaGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 39954 | 0.66 | 0.886679 |
Target: 5'- -uGGGGCUCugcgaUGUCC-CGUUGGGGUUCu -3' miRNA: 3'- ggUCCUGGG-----ACAGGuGCAGUCUCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 40331 | 0.66 | 0.8935 |
Target: 5'- gCCGGGACCUUGUgguacaggaCCugauCGUCcuuGUCCc -3' miRNA: 3'- -GGUCCUGGGACA---------GGu---GCAGucuCAGG- -5' |
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28341 | 5' | -55.7 | NC_005946.1 | + | 41410 | 0.74 | 0.465749 |
Target: 5'- cCCGGcGGaccguccucuccguCCCUGcCCcCGUCAGGGUCCg -3' miRNA: 3'- -GGUC-CU--------------GGGACaGGuGCAGUCUCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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