miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28341 5' -55.7 NC_005946.1 + 103098 0.7 0.676328
Target:  5'- gCCGGGACCCaggggagagaaggGUCCAa---GGGGUCCc -3'
miRNA:   3'- -GGUCCUGGGa------------CAGGUgcagUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 102295 0.77 0.295559
Target:  5'- gCAGGGCCCcGcacgCCaggGCGUCAGAGUCUa -3'
miRNA:   3'- gGUCCUGGGaCa---GG---UGCAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 102092 0.7 0.659867
Target:  5'- gUCAGGACCUgcaCCGucUCGGGGUCCg -3'
miRNA:   3'- -GGUCCUGGGacaGGUgcAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 94878 0.66 0.86486
Target:  5'- cCCAGGACCCcuaUGgucaagCCACcauUCAGGaUCCc -3'
miRNA:   3'- -GGUCCUGGG---ACa-----GGUGc--AGUCUcAGG- -5'
28341 5' -55.7 NC_005946.1 + 88148 0.7 0.670164
Target:  5'- cUCAGG-CCCUGUCCAgGguggUGGGGaCCa -3'
miRNA:   3'- -GGUCCuGGGACAGGUgCa---GUCUCaGG- -5'
28341 5' -55.7 NC_005946.1 + 86799 0.71 0.618536
Target:  5'- gCCGGGACCCUGcUCCugccccugaugACGUCcaccucccuGUCCg -3'
miRNA:   3'- -GGUCCUGGGAC-AGG-----------UGCAGucu------CAGG- -5'
28341 5' -55.7 NC_005946.1 + 82903 0.68 0.792303
Target:  5'- uUCAGGGCCCcGgagccagucgCCACGggacacucgcugucCAGGGUCCc -3'
miRNA:   3'- -GGUCCUGGGaCa---------GGUGCa-------------GUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 76724 0.67 0.819126
Target:  5'- -aGGGGCCCcGcgggcgcaggcggagUCCACGUCcaccugguGGGUCCa -3'
miRNA:   3'- ggUCCUGGGaC---------------AGGUGCAGu-------CUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 75350 0.72 0.577368
Target:  5'- cCCGguGGACCCguaccCCGCGUCaccccugucgguAGAGUCCa -3'
miRNA:   3'- -GGU--CCUGGGaca--GGUGCAG------------UCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 75194 0.68 0.769879
Target:  5'- gCCgAGGuugcCCCUGUa---GUCGGGGUCCa -3'
miRNA:   3'- -GG-UCCu---GGGACAggugCAGUCUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 75061 0.7 0.649547
Target:  5'- aCCAGGGCCCUG-CCAaaggaGGGGaCCa -3'
miRNA:   3'- -GGUCCUGGGACaGGUgcag-UCUCaGG- -5'
28341 5' -55.7 NC_005946.1 + 69621 0.67 0.832807
Target:  5'- cCCAGGGguCCCUGUCCucca-GGAGggCCu -3'
miRNA:   3'- -GGUCCU--GGGACAGGugcagUCUCa-GG- -5'
28341 5' -55.7 NC_005946.1 + 67887 0.66 0.87963
Target:  5'- gCCAGGACC---UCCGCcUCGGGGUa- -3'
miRNA:   3'- -GGUCCUGGgacAGGUGcAGUCUCAgg -5'
28341 5' -55.7 NC_005946.1 + 64370 0.67 0.844389
Target:  5'- -uGGGGCCCgugGUCCcacccuuuaggaaagACGUCGcaaAGUCCu -3'
miRNA:   3'- ggUCCUGGGa--CAGG---------------UGCAGUc--UCAGG- -5'
28341 5' -55.7 NC_005946.1 + 63542 0.67 0.841118
Target:  5'- gCAGGACCCcaggGUgaggguucUCACGUCGGccgcauAGUCUg -3'
miRNA:   3'- gGUCCUGGGa---CA--------GGUGCAGUC------UCAGG- -5'
28341 5' -55.7 NC_005946.1 + 58188 0.66 0.8935
Target:  5'- -gAGGACCCccuacaacacUGUCCACGaUCAc-GUCUa -3'
miRNA:   3'- ggUCCUGGG----------ACAGGUGC-AGUcuCAGG- -5'
28341 5' -55.7 NC_005946.1 + 57903 0.7 0.690656
Target:  5'- gCCAGGGCCCUGUuggCCGgGggGGAGagcgCCc -3'
miRNA:   3'- -GGUCCUGGGACA---GGUgCagUCUCa---GG- -5'
28341 5' -55.7 NC_005946.1 + 56417 0.66 0.86486
Target:  5'- uCCAGGAgCCUuugGUCCGgaggcaccaggcCGUCugugacggccGAGUCCa -3'
miRNA:   3'- -GGUCCUgGGA---CAGGU------------GCAGu---------CUCAGG- -5'
28341 5' -55.7 NC_005946.1 + 56066 0.75 0.396427
Target:  5'- uCCAGGgugagggugGCCCUGUCUACGUUcaggagggaagaGGGGUCg -3'
miRNA:   3'- -GGUCC---------UGGGACAGGUGCAG------------UCUCAGg -5'
28341 5' -55.7 NC_005946.1 + 52090 0.66 0.86486
Target:  5'- -gGGGAgaCUGUCuCACGuUCAGAGUUUu -3'
miRNA:   3'- ggUCCUggGACAG-GUGC-AGUCUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.