Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28348 | 5' | -54.9 | NC_005946.1 | + | 53431 | 0.66 | 0.915817 |
Target: 5'- cGUGGAcCGuGGACGCCaaaggggUAGAGgaCCu -3' miRNA: 3'- cCGCCU-GCuCCUGUGGg------AUCUCaaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 36388 | 0.66 | 0.909801 |
Target: 5'- uGCGGGC-AGGG-ACCCgGGAGacUUCCa -3' miRNA: 3'- cCGCCUGcUCCUgUGGGaUCUC--AAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 28291 | 0.66 | 0.903542 |
Target: 5'- uGGCGGAaccggcaGAGGGCuuucuGCCCgucAGGG-UCUg -3' miRNA: 3'- -CCGCCUg------CUCCUG-----UGGGa--UCUCaAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 56459 | 0.66 | 0.903542 |
Target: 5'- uGCgGGGCGuGGAC-CUCUGGAGUc-- -3' miRNA: 3'- cCG-CCUGCuCCUGuGGGAUCUCAagg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 8776 | 0.66 | 0.902903 |
Target: 5'- gGGCGucguACGAGGGucugguCACCCUgcccaggGGAGaUCCg -3' miRNA: 3'- -CCGCc---UGCUCCU------GUGGGA-------UCUCaAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 86544 | 0.66 | 0.897041 |
Target: 5'- aGCuuGAUGGGGuuggaGCCgUAGGGUUCCa -3' miRNA: 3'- cCGc-CUGCUCCug---UGGgAUCUCAAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 79773 | 0.66 | 0.890301 |
Target: 5'- cGGCGGcagaagACGGGGGCugCUgcuuGGGUaugacggacuggUCCa -3' miRNA: 3'- -CCGCC------UGCUCCUGugGGau--CUCA------------AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 40126 | 0.66 | 0.889615 |
Target: 5'- cGGCGGGCauaaacaGAGGGgGCCUgacGGGGacCCu -3' miRNA: 3'- -CCGCCUG-------CUCCUgUGGGa--UCUCaaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 14635 | 0.67 | 0.876123 |
Target: 5'- aGGCcGACaAGGGCACCCUgcuGGAcgcuUUCCc -3' miRNA: 3'- -CCGcCUGcUCCUGUGGGA---UCUc---AAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 55646 | 0.67 | 0.861044 |
Target: 5'- cGGUGGGguUGAGGA-GCCCgugAGGGUaCCc -3' miRNA: 3'- -CCGCCU--GCUCCUgUGGGa--UCUCAaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 102142 | 0.67 | 0.861044 |
Target: 5'- aGuCGucCGAGGugACCCUGGuGUcCCu -3' miRNA: 3'- cC-GCcuGCUCCugUGGGAUCuCAaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 17082 | 0.67 | 0.853181 |
Target: 5'- gGGCuacGAUGAGaACGCCCUGGAGg--- -3' miRNA: 3'- -CCGc--CUGCUCcUGUGGGAUCUCaagg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 62417 | 0.67 | 0.845111 |
Target: 5'- uGCGGAUGuuccauGGAC-CCCgcGGGGUUCg -3' miRNA: 3'- cCGCCUGCu-----CCUGuGGGa-UCUCAAGg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 72841 | 0.67 | 0.845111 |
Target: 5'- aGgGGGCGGGGuucuCCCUGGAGacacCCa -3' miRNA: 3'- cCgCCUGCUCCugu-GGGAUCUCaa--GG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 94745 | 0.68 | 0.828379 |
Target: 5'- uGGCGGGucacagcauCaAGGGCACCgUccucccagAGGGUUCCa -3' miRNA: 3'- -CCGCCU---------GcUCCUGUGGgA--------UCUCAAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 95307 | 0.69 | 0.78347 |
Target: 5'- cGUGGACGAGGcCACCagAGAGgcggaaaagaUCCu -3' miRNA: 3'- cCGCCUGCUCCuGUGGgaUCUCa---------AGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 48471 | 0.69 | 0.77403 |
Target: 5'- aGGaaGAUGAGGGCuCCCUcuggcaGGGGUUCg -3' miRNA: 3'- -CCgcCUGCUCCUGuGGGA------UCUCAAGg -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 83725 | 0.69 | 0.744963 |
Target: 5'- gGGCgcgGGugGGGGGCgAUCCaGGAG-UCCa -3' miRNA: 3'- -CCG---CCugCUCCUG-UGGGaUCUCaAGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 878 | 0.7 | 0.724054 |
Target: 5'- aGUGGAUGAGGuugacguuuucguACugCUUAGAGUgCCu -3' miRNA: 3'- cCGCCUGCUCC-------------UGugGGAUCUCAaGG- -5' |
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28348 | 5' | -54.9 | NC_005946.1 | + | 35255 | 0.7 | 0.704822 |
Target: 5'- gGGCauGGGCGAGGACGgCUgcGGGaugUCCu -3' miRNA: 3'- -CCG--CCUGCUCCUGUgGGauCUCa--AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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