miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28353 3' -54 NC_005946.1 + 83917 0.66 0.902787
Target:  5'- gGACAGaCAGGgucuacUCGGAGG-CGGGGUGg -3'
miRNA:   3'- -CUGUUaGUCC------GGUCUCCuGCCCUAUa -5'
28353 3' -54 NC_005946.1 + 40642 0.66 0.896015
Target:  5'- aGACA---GGGCCAcGAGGGCGGcGGa-- -3'
miRNA:   3'- -CUGUuagUCCGGU-CUCCUGCC-CUaua -5'
28353 3' -54 NC_005946.1 + 72851 0.67 0.866418
Target:  5'- aACAu---GGCCgAGGGGGCGGGGUu- -3'
miRNA:   3'- cUGUuaguCCGG-UCUCCUGCCCUAua -5'
28353 3' -54 NC_005946.1 + 76325 0.68 0.777206
Target:  5'- aGACGugggagguAUgGGGCCAGAGGGCccaaaGGGAg-- -3'
miRNA:   3'- -CUGU--------UAgUCCGGUCUCCUG-----CCCUaua -5'
28353 3' -54 NC_005946.1 + 13198 0.69 0.767329
Target:  5'- cGACAGgcUCaAGGCCAGGGGAgaGGcGGUGg -3'
miRNA:   3'- -CUGUU--AG-UCCGGUCUCCUg-CC-CUAUa -5'
28353 3' -54 NC_005946.1 + 56877 0.7 0.716151
Target:  5'- uGACAG--GGGCgaAGAGGACGGGGg-- -3'
miRNA:   3'- -CUGUUagUCCGg-UCUCCUGCCCUaua -5'
28353 3' -54 NC_005946.1 + 93853 0.7 0.690795
Target:  5'- aGGgGA-CAGGCCuuuaggagaaaauGGGGACGGGGUGUg -3'
miRNA:   3'- -CUgUUaGUCCGGu------------CUCCUGCCCUAUA- -5'
28353 3' -54 NC_005946.1 + 72519 0.7 0.673708
Target:  5'- cGACAGUCccccGGCCcccGAGGAgaGGGAUAUa -3'
miRNA:   3'- -CUGUUAGu---CCGGu--CUCCUg-CCCUAUA- -5'
28353 3' -54 NC_005946.1 + 13679 0.71 0.630658
Target:  5'- uGGCGGUCAuGCCagacaGGAGGugGGGAUc- -3'
miRNA:   3'- -CUGUUAGUcCGG-----UCUCCugCCCUAua -5'
28353 3' -54 NC_005946.1 + 83023 0.71 0.609103
Target:  5'- aGACAacAUCAuGGCCGGAGGcACGGcGAg-- -3'
miRNA:   3'- -CUGU--UAGU-CCGGUCUCC-UGCC-CUaua -5'
28353 3' -54 NC_005946.1 + 95371 0.71 0.609103
Target:  5'- gGACcGUCAGGcCCAGGGGcuuCGGGGg-- -3'
miRNA:   3'- -CUGuUAGUCC-GGUCUCCu--GCCCUaua -5'
28353 3' -54 NC_005946.1 + 71841 0.85 0.110563
Target:  5'- aGGCccgCGGGCCAGAGGACGGGAg-- -3'
miRNA:   3'- -CUGuuaGUCCGGUCUCCUGCCCUaua -5'
28353 3' -54 NC_005946.1 + 13958 1.05 0.004383
Target:  5'- aGACAAUCAGGCCAGAGGACGGGAUAUu -3'
miRNA:   3'- -CUGUUAGUCCGGUCUCCUGCCCUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.