Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28353 | 5' | -57.3 | NC_005946.1 | + | 38750 | 0.66 | 0.80372 |
Target: 5'- cGGAGACCUCCUgGgugaAGCCacuCuGGCUu -3' miRNA: 3'- -CCUCUGGAGGAgU----UCGGgcuGcUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 28654 | 0.66 | 0.785423 |
Target: 5'- gGGGGGCCg--UC-AGCCUGuCGAGCUu -3' miRNA: 3'- -CCUCUGGaggAGuUCGGGCuGCUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 10285 | 0.66 | 0.785423 |
Target: 5'- gGGAGcGCCggggCAuAGUCCGACGGGCa -3' miRNA: 3'- -CCUC-UGGaggaGU-UCGGGCUGCUCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 35162 | 0.66 | 0.785423 |
Target: 5'- cGGGGgcaugucauaGCCUCCagggcagcacUCAAGCCUGACGGa-- -3' miRNA: 3'- -CCUC----------UGGAGG----------AGUUCGGGCUGCUcga -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 74507 | 0.66 | 0.766562 |
Target: 5'- cGGcGGCCUCCUCcucGGCCuCGACcuGGUUg -3' miRNA: 3'- -CCuCUGGAGGAGu--UCGG-GCUGc-UCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 19674 | 0.67 | 0.756943 |
Target: 5'- gGGAGGCCgagagggCCUCGGGUCaguUGGGCa -3' miRNA: 3'- -CCUCUGGa------GGAGUUCGGgcuGCUCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 61174 | 0.67 | 0.756943 |
Target: 5'- gGGGGACCgUCCUgGAcCCCGugGAc-- -3' miRNA: 3'- -CCUCUGG-AGGAgUUcGGGCugCUcga -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 59837 | 0.67 | 0.756943 |
Target: 5'- cGAGAgcgUCUCCUgGAGCuuGACG-GCc -3' miRNA: 3'- cCUCU---GGAGGAgUUCGggCUGCuCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 36373 | 0.67 | 0.746232 |
Target: 5'- gGGAGACUUCCaCAgucucuugaggugGGCCgCGGCG-GCg -3' miRNA: 3'- -CCUCUGGAGGaGU-------------UCGG-GCUGCuCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 95374 | 0.67 | 0.737376 |
Target: 5'- gGGGGACCg--UCAGGCCC-AgGGGCUu -3' miRNA: 3'- -CCUCUGGaggAGUUCGGGcUgCUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 76586 | 0.67 | 0.727448 |
Target: 5'- cGGuGACaucggUCCggUCGGGCCCGugGgAGCg -3' miRNA: 3'- -CCuCUGg----AGG--AGUUCGGGCugC-UCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 57857 | 0.68 | 0.694137 |
Target: 5'- gGGAGGCCUUCUUuuGCUaCGACGAcucuccauacaugaGCUa -3' miRNA: 3'- -CCUCUGGAGGAGuuCGG-GCUGCU--------------CGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 62829 | 0.68 | 0.666438 |
Target: 5'- --cGACCggcUCCUCAcAGCCCGucAUGGGCUc -3' miRNA: 3'- ccuCUGG---AGGAGU-UCGGGC--UGCUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 20708 | 0.68 | 0.663344 |
Target: 5'- --uGGCCggCCUCgAGGCCCuggucgcaaagaagGACGAGCUg -3' miRNA: 3'- ccuCUGGa-GGAG-UUCGGG--------------CUGCUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 20624 | 0.68 | 0.645776 |
Target: 5'- uGGAGcuCCUCaacgUCAAGCCCGAUcgucucaaGAGCc -3' miRNA: 3'- -CCUCu-GGAGg---AGUUCGGGCUG--------CUCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 34758 | 0.69 | 0.62507 |
Target: 5'- gGGGGACUUUCUCccaaacugccaGGGCUCGAUGAuGCg -3' miRNA: 3'- -CCUCUGGAGGAG-----------UUCGGGCUGCU-CGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 27830 | 0.7 | 0.563328 |
Target: 5'- cGGGGGcCCUCCUCGacAGCuuGuccuCGGGCc -3' miRNA: 3'- -CCUCU-GGAGGAGU--UCGggCu---GCUCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 102164 | 0.7 | 0.55317 |
Target: 5'- aGGGACCUCCUCAugAGCUCGuagucgucCGAGgUg -3' miRNA: 3'- cCUCUGGAGGAGU--UCGGGCu-------GCUCgA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 104021 | 0.72 | 0.41912 |
Target: 5'- cGGAGGCCaCCUUAcccgccAGCUgGugGAGCUg -3' miRNA: 3'- -CCUCUGGaGGAGU------UCGGgCugCUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 98076 | 0.73 | 0.38453 |
Target: 5'- gGGAGACCUCCcgCAaggucggaGGCCaCGAUGGGgCUg -3' miRNA: 3'- -CCUCUGGAGGa-GU--------UCGG-GCUGCUC-GA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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