Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28353 | 5' | -57.3 | NC_005946.1 | + | 76586 | 0.67 | 0.727448 |
Target: 5'- cGGuGACaucggUCCggUCGGGCCCGugGgAGCg -3' miRNA: 3'- -CCuCUGg----AGG--AGUUCGGGCugC-UCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 88319 | 0.81 | 0.121273 |
Target: 5'- -uGGACCUCCUCAGGCgCGAgGGGCa -3' miRNA: 3'- ccUCUGGAGGAGUUCGgGCUgCUCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 95374 | 0.67 | 0.737376 |
Target: 5'- gGGGGACCg--UCAGGCCC-AgGGGCUu -3' miRNA: 3'- -CCUCUGGaggAGUUCGGGcUgCUCGA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 95444 | 0.74 | 0.344035 |
Target: 5'- gGGAGACCcgCCgCAGGCUCGA-GAGCa -3' miRNA: 3'- -CCUCUGGa-GGaGUUCGGGCUgCUCGa -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 98076 | 0.73 | 0.38453 |
Target: 5'- gGGAGACCUCCcgCAaggucggaGGCCaCGAUGGGgCUg -3' miRNA: 3'- -CCUCUGGAGGa-GU--------UCGG-GCUGCUC-GA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 102164 | 0.7 | 0.55317 |
Target: 5'- aGGGACCUCCUCAugAGCUCGuagucgucCGAGgUg -3' miRNA: 3'- cCUCUGGAGGAGU--UCGGGCu-------GCUCgA- -5' |
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28353 | 5' | -57.3 | NC_005946.1 | + | 104021 | 0.72 | 0.41912 |
Target: 5'- cGGAGGCCaCCUUAcccgccAGCUgGugGAGCUg -3' miRNA: 3'- -CCUCUGGaGGAGU------UCGGgCugCUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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