Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28354 | 5' | -59.8 | NC_005946.1 | + | 40108 | 0.66 | 0.681061 |
Target: 5'- gGggCCUGACGGGgACCCU----GCCg -3' miRNA: 3'- aCgaGGACUGCCCgUGGGGguacUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 40709 | 0.66 | 0.660744 |
Target: 5'- cUGCUCCcaccagGAUGGGU--UUCCAUGACUc -3' miRNA: 3'- -ACGAGGa-----CUGCCCGugGGGGUACUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 93966 | 0.66 | 0.660744 |
Target: 5'- cUGUcugUCCUGAU---CACCCCCAUGuACCc -3' miRNA: 3'- -ACG---AGGACUGcccGUGGGGGUAC-UGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 8571 | 0.66 | 0.660744 |
Target: 5'- gGCUa-UGGCuucGGGCACCCCCAccucGuCCa -3' miRNA: 3'- aCGAggACUG---CCCGUGGGGGUa---CuGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 21788 | 0.66 | 0.660744 |
Target: 5'- cGCUggccgaucgCCUGuCGGaCAgCCCgGUGACCa -3' miRNA: 3'- aCGA---------GGACuGCCcGUgGGGgUACUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 4074 | 0.66 | 0.650547 |
Target: 5'- gGUgaCCUGACaGGGCugUCCCAucaUGGuCCu -3' miRNA: 3'- aCGa-GGACUG-CCCGugGGGGU---ACU-GG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 99472 | 0.66 | 0.630117 |
Target: 5'- cGUUCUUGAggcagauuggccUGGGCACCUCCAcuucgGugCc -3' miRNA: 3'- aCGAGGACU------------GCCCGUGGGGGUa----CugG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 83125 | 0.67 | 0.619901 |
Target: 5'- aGCcgUCCUGAgGGaGCccACUCCCA-GGCCc -3' miRNA: 3'- aCG--AGGACUgCC-CG--UGGGGGUaCUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 49537 | 0.67 | 0.599503 |
Target: 5'- aGCUCCUGACGGacucuuggguGCAcgaucCCUCCcUGAUg -3' miRNA: 3'- aCGAGGACUGCC----------CGU-----GGGGGuACUGg -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 72687 | 0.67 | 0.589336 |
Target: 5'- gUGCggCgUGACGGGUGaCCCCGUGGg- -3' miRNA: 3'- -ACGa-GgACUGCCCGUgGGGGUACUgg -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 17738 | 0.67 | 0.569103 |
Target: 5'- cGUUCCUGGCcgGGGCACUCUUucuuaucuUGACg -3' miRNA: 3'- aCGAGGACUG--CCCGUGGGGGu-------ACUGg -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 23867 | 0.68 | 0.559049 |
Target: 5'- aGcCUCCgGGCGGG-ACCCUCuUGACa -3' miRNA: 3'- aC-GAGGaCUGCCCgUGGGGGuACUGg -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 26463 | 0.68 | 0.539099 |
Target: 5'- uUGCgcacugCCUGACGGGCuuggucaagaccACCCCgCAgagGuCCc -3' miRNA: 3'- -ACGa-----GGACUGCCCG------------UGGGG-GUa--CuGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 28388 | 0.68 | 0.519397 |
Target: 5'- aUGCUCUUGA-GGGUGCCCgCGuUGAUg -3' miRNA: 3'- -ACGAGGACUgCCCGUGGGgGU-ACUGg -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 49732 | 0.68 | 0.519397 |
Target: 5'- -aCUCUUGGacCGGGCAugUCCCguUGACCg -3' miRNA: 3'- acGAGGACU--GCCCGU--GGGGguACUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 22094 | 0.68 | 0.509653 |
Target: 5'- gGC-CCUGAacaCGGGCccuCCCCCuUGAUg -3' miRNA: 3'- aCGaGGACU---GCCCGu--GGGGGuACUGg -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 17552 | 0.69 | 0.499985 |
Target: 5'- cGCugaUCCUGAUGgacucuacuccGGCcuCUCCCAUGGCCu -3' miRNA: 3'- aCG---AGGACUGC-----------CCGu-GGGGGUACUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 48460 | 0.69 | 0.452963 |
Target: 5'- gGCUCCcucUGGCagGGGUucgGCCUgCAUGACCc -3' miRNA: 3'- aCGAGG---ACUG--CCCG---UGGGgGUACUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 98390 | 0.7 | 0.443847 |
Target: 5'- cGCUCUUGACGGGaucUACCgcaagggcuggcUCCAgGACCg -3' miRNA: 3'- aCGAGGACUGCCC---GUGG------------GGGUaCUGG- -5' |
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28354 | 5' | -59.8 | NC_005946.1 | + | 48660 | 0.7 | 0.42948 |
Target: 5'- aGCUCCUG-CGcGCagGCCCCCAUcgcagaaggguccaaGGCCa -3' miRNA: 3'- aCGAGGACuGCcCG--UGGGGGUA---------------CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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