Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28356 | 3' | -57 | NC_005946.1 | + | 16608 | 1.12 | 0.001034 |
Target: 5'- gGCCCCGUCAACGCAGACUCUCCUCCCc -3' miRNA: 3'- -CGGGGCAGUUGCGUCUGAGAGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 8123 | 0.75 | 0.347412 |
Target: 5'- aCCCUGUCcACGuCAGAgUC-CCUCCCc -3' miRNA: 3'- cGGGGCAGuUGC-GUCUgAGaGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 30458 | 0.71 | 0.516503 |
Target: 5'- aGCCCgGUCGcUGC--GCUCUCCacUCCCa -3' miRNA: 3'- -CGGGgCAGUuGCGucUGAGAGG--AGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 72467 | 0.71 | 0.546343 |
Target: 5'- uCCUCGUCccCGuCGGACUCUC-UCCCu -3' miRNA: 3'- cGGGGCAGuuGC-GUCUGAGAGgAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 68071 | 0.71 | 0.556415 |
Target: 5'- uUCCCGUCAG-GCAGAgCUCcUCUUCCa -3' miRNA: 3'- cGGGGCAGUUgCGUCU-GAG-AGGAGGg -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 66460 | 0.7 | 0.576712 |
Target: 5'- cGCCU--UCAACGCcgugcgAGAgUCUUCUCCCa -3' miRNA: 3'- -CGGGgcAGUUGCG------UCUgAGAGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 82685 | 0.69 | 0.638334 |
Target: 5'- aGCUCaCGUCGgagggcccuACGCGGgugcaaugGCUC-CCUCCCa -3' miRNA: 3'- -CGGG-GCAGU---------UGCGUC--------UGAGaGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 83191 | 0.68 | 0.68961 |
Target: 5'- gGCCCCG-CAcAgGCAGucCUCUUCgCCCa -3' miRNA: 3'- -CGGGGCaGU-UgCGUCu-GAGAGGaGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 20960 | 0.68 | 0.709844 |
Target: 5'- aGUCauaCGUgGugGCGGAC-CUggCCUCCCa -3' miRNA: 3'- -CGGg--GCAgUugCGUCUGaGA--GGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 38339 | 0.68 | 0.709844 |
Target: 5'- cCCCCGUCAuguUGUGGAUUCcuaUCCCg -3' miRNA: 3'- cGGGGCAGUu--GCGUCUGAGaggAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 63610 | 0.68 | 0.709844 |
Target: 5'- aCCUCGUa---GCAGAgcaucCUCUCCUCCa -3' miRNA: 3'- cGGGGCAguugCGUCU-----GAGAGGAGGg -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 64993 | 0.68 | 0.709844 |
Target: 5'- gGCgUCGUCAGCcuCAGcCUCUCUaUCCCg -3' miRNA: 3'- -CGgGGCAGUUGc-GUCuGAGAGG-AGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 94539 | 0.68 | 0.713861 |
Target: 5'- aGCUuuGgagCGACgGCGGugUCaucgucuccuuccccUCCUCCCa -3' miRNA: 3'- -CGGggCa--GUUG-CGUCugAG---------------AGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 47686 | 0.68 | 0.719865 |
Target: 5'- aUCCCGUCcagccuGACGCuGACaacCCUCCCc -3' miRNA: 3'- cGGGGCAG------UUGCGuCUGagaGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 49553 | 0.68 | 0.728819 |
Target: 5'- cCCCCGUUugcCGCaaagcuccugacGGACUCUugggugcacgaucCCUCCCu -3' miRNA: 3'- cGGGGCAGuu-GCG------------UCUGAGA-------------GGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 76721 | 0.68 | 0.72981 |
Target: 5'- gGCCCCGcgGGCGCAGGCggagUCCacgUCCa -3' miRNA: 3'- -CGGGGCagUUGCGUCUGag--AGGa--GGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 60117 | 0.67 | 0.739669 |
Target: 5'- uCCaCCGUCccccaGUAGuCUgUCCUCCCg -3' miRNA: 3'- cGG-GGCAGuug--CGUCuGAgAGGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 74457 | 0.67 | 0.759093 |
Target: 5'- aCCCCGUCGucauCGGGCUCcucguaUCCUgCCCu -3' miRNA: 3'- cGGGGCAGUugc-GUCUGAG------AGGA-GGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 9817 | 0.67 | 0.768639 |
Target: 5'- cCCCCGUCuaucuccuuGCcCGGcCUCgacCCUCCCa -3' miRNA: 3'- cGGGGCAGu--------UGcGUCuGAGa--GGAGGG- -5' |
|||||||
28356 | 3' | -57 | NC_005946.1 | + | 86124 | 0.67 | 0.778062 |
Target: 5'- uCCCUGUCGAgGgcuucCAGcUUCUCCUCCa -3' miRNA: 3'- cGGGGCAGUUgC-----GUCuGAGAGGAGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home