miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28371 5' -56.9 NC_005946.1 + 75136 0.68 0.715196
Target:  5'- uUCAgGGCCAggcCGGACcugGGAGCCa -3'
miRNA:   3'- gAGUgCCGGUgguGCCUGca-CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 76724 0.66 0.843933
Target:  5'- --aGgGGCC-CCGCGGGCGcaggcGGAGuCCa -3'
miRNA:   3'- gagUgCCGGuGGUGCCUGCa----CCUU-GG- -5'
28371 5' -56.9 NC_005946.1 + 77249 0.67 0.754517
Target:  5'- --uGCgGGCCAguCUGCGGGC-UGGAGCCc -3'
miRNA:   3'- gagUG-CCGGU--GGUGCCUGcACCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 78990 0.66 0.827349
Target:  5'- --gGCGGCguaCGCCAgGGcCG-GGGGCCa -3'
miRNA:   3'- gagUGCCG---GUGGUgCCuGCaCCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 79672 0.68 0.744827
Target:  5'- aUCAUGGCgACCAUGu-CGUGcuGGACCu -3'
miRNA:   3'- gAGUGCCGgUGGUGCcuGCAC--CUUGG- -5'
28371 5' -56.9 NC_005946.1 + 82298 0.7 0.602878
Target:  5'- --gACGGCCACCcCGGuCaacaGGAGCCa -3'
miRNA:   3'- gagUGCCGGUGGuGCCuGca--CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 83436 0.67 0.764098
Target:  5'- -gCACGGCCAUCACccuGGCGUGucuCCc -3'
miRNA:   3'- gaGUGCCGGUGGUGc--CUGCACcuuGG- -5'
28371 5' -56.9 NC_005946.1 + 85023 0.66 0.827349
Target:  5'- cCUCAUGGgCAUgAUGGAgGgcaucagGGAGCUa -3'
miRNA:   3'- -GAGUGCCgGUGgUGCCUgCa------CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 85061 0.73 0.410234
Target:  5'- aCUCugGGCagagcugcucCACaCACGGACGcGGAACa -3'
miRNA:   3'- -GAGugCCG----------GUG-GUGCCUGCaCCUUGg -5'
28371 5' -56.9 NC_005946.1 + 86947 0.68 0.695069
Target:  5'- aCUCG-GGa-ACCugGcGugGUGGAGCCa -3'
miRNA:   3'- -GAGUgCCggUGGugC-CugCACCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 88149 0.72 0.464441
Target:  5'- gCUCA-GGCCcuguCCAgGGugGUgGGGACCa -3'
miRNA:   3'- -GAGUgCCGGu---GGUgCCugCA-CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 104363 0.68 0.715196
Target:  5'- cCUCAgGGCCACCAUcuccuCG-GGAGCUu -3'
miRNA:   3'- -GAGUgCCGGUGGUGccu--GCaCCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.