Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28371 | 5' | -56.9 | NC_005946.1 | + | 13742 | 0.66 | 0.801149 |
Target: 5'- -cCuCGGCCugggACCA-GGACGccgGGGACCg -3' miRNA: 3'- gaGuGCCGG----UGGUgCCUGCa--CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 14194 | 0.68 | 0.744827 |
Target: 5'- -gCGUGGCCACCAUGaGCGcGGAgGCCa -3' miRNA: 3'- gaGUGCCGGUGGUGCcUGCaCCU-UGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 20873 | 0.67 | 0.773561 |
Target: 5'- --aGCaGGCCGCCGCGGugGcccUGaGGGCa -3' miRNA: 3'- gagUG-CCGGUGGUGCCugC---AC-CUUGg -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 21603 | 0.66 | 0.835735 |
Target: 5'- cCUguCGGCCGCCAUcuccaacacCGUGaGAGCCg -3' miRNA: 3'- -GAguGCCGGUGGUGccu------GCAC-CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 21830 | 0.67 | 0.781969 |
Target: 5'- -aCACuGCCGCCAgGGugGccgucaaUGGcGCCa -3' miRNA: 3'- gaGUGcCGGUGGUgCCugC-------ACCuUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 23553 | 0.66 | 0.801149 |
Target: 5'- uUUACGaCCACCucauCGGGCacGGAACCc -3' miRNA: 3'- gAGUGCcGGUGGu---GCCUGcaCCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 31680 | 1.11 | 0.001409 |
Target: 5'- cCUCACGGCCACCACGGACGUGGAACCc -3' miRNA: 3'- -GAGUGCCGGUGGUGCCUGCACCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 34405 | 0.73 | 0.445947 |
Target: 5'- -aCAUGGaCACCACGGgaACGUGaGGGCCc -3' miRNA: 3'- gaGUGCCgGUGGUGCC--UGCAC-CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 34437 | 0.68 | 0.744827 |
Target: 5'- --gACGGCUAUguCGGcguAgGUGGGACCg -3' miRNA: 3'- gagUGCCGGUGguGCC---UgCACCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 35467 | 0.71 | 0.562125 |
Target: 5'- aUCACGGCCGCUGUGGACucUGGGucagacgcuGCCa -3' miRNA: 3'- gAGUGCCGGUGGUGCCUGc-ACCU---------UGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 35943 | 0.69 | 0.67779 |
Target: 5'- -cCACGGCCGCCgccagggcccucgcaGCGGgACGUuuGGAaguccugGCCg -3' miRNA: 3'- gaGUGCCGGUGG---------------UGCC-UGCA--CCU-------UGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 44545 | 0.71 | 0.57124 |
Target: 5'- cCUCACGGCCcUgGCGGugugagGCGUcuugaggGGAGCCu -3' miRNA: 3'- -GAGUGCCGGuGgUGCC------UGCA-------CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 47409 | 0.69 | 0.684921 |
Target: 5'- -gCGcCGGCCACuCugGGGCGggcuuGAACCc -3' miRNA: 3'- gaGU-GCCGGUG-GugCCUGCac---CUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 56516 | 0.67 | 0.792096 |
Target: 5'- uUCACGGggcccCCugCGaaagucaGGACGUgcGGGACCu -3' miRNA: 3'- gAGUGCC-----GGugGUg------CCUGCA--CCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 59996 | 0.66 | 0.810048 |
Target: 5'- uUUugGGCCgGCCACGGggcccGCGU--AACCg -3' miRNA: 3'- gAGugCCGG-UGGUGCC-----UGCAccUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 60141 | 0.77 | 0.273318 |
Target: 5'- gUCAgGGCUGCCGUGGugGUGGggUCc -3' miRNA: 3'- gAGUgCCGGUGGUGCCugCACCuuGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 61526 | 0.67 | 0.754517 |
Target: 5'- aUCACGGgCAagAUGGAC-UGGAACUc -3' miRNA: 3'- gAGUGCCgGUggUGCCUGcACCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 62131 | 0.67 | 0.782897 |
Target: 5'- gCUCACGGCgcaGCCAgGGA-GaGGGGCUc -3' miRNA: 3'- -GAGUGCCGg--UGGUgCCUgCaCCUUGG- -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 67727 | 0.69 | 0.654248 |
Target: 5'- -cCAgGGCCACCACGGugaccuCGggcugaGGGACg -3' miRNA: 3'- gaGUgCCGGUGGUGCCu-----GCa-----CCUUGg -5' |
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28371 | 5' | -56.9 | NC_005946.1 | + | 70617 | 0.7 | 0.627527 |
Target: 5'- cCUgAUGGCCGCUauguaGCGGACcauuacccccaagauGUGGAGCg -3' miRNA: 3'- -GAgUGCCGGUGG-----UGCCUG---------------CACCUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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