miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28371 5' -56.9 NC_005946.1 + 76724 0.66 0.843933
Target:  5'- --aGgGGCC-CCGCGGGCGcaggcGGAGuCCa -3'
miRNA:   3'- gagUgCCGGuGGUGCCUGCa----CCUU-GG- -5'
28371 5' -56.9 NC_005946.1 + 86947 0.68 0.695069
Target:  5'- aCUCG-GGa-ACCugGcGugGUGGAGCCa -3'
miRNA:   3'- -GAGUgCCggUGGugC-CugCACCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 104363 0.68 0.715196
Target:  5'- cCUCAgGGCCACCAUcuccuCG-GGAGCUu -3'
miRNA:   3'- -GAGUgCCGGUGGUGccu--GCaCCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 75136 0.68 0.715196
Target:  5'- uUCAgGGCCAggcCGGACcugGGAGCCa -3'
miRNA:   3'- gAGUgCCGGUgguGCCUGca-CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 34437 0.68 0.744827
Target:  5'- --gACGGCUAUguCGGcguAgGUGGGACCg -3'
miRNA:   3'- gagUGCCGGUGguGCC---UgCACCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 14194 0.68 0.744827
Target:  5'- -gCGUGGCCACCAUGaGCGcGGAgGCCa -3'
miRNA:   3'- gaGUGCCGGUGGUGCcUGCaCCU-UGG- -5'
28371 5' -56.9 NC_005946.1 + 79672 0.68 0.744827
Target:  5'- aUCAUGGCgACCAUGu-CGUGcuGGACCu -3'
miRNA:   3'- gAGUGCCGgUGGUGCcuGCAC--CUUGG- -5'
28371 5' -56.9 NC_005946.1 + 77249 0.67 0.754517
Target:  5'- --uGCgGGCCAguCUGCGGGC-UGGAGCCc -3'
miRNA:   3'- gagUG-CCGGU--GGUGCCUGcACCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 61526 0.67 0.754517
Target:  5'- aUCACGGgCAagAUGGAC-UGGAACUc -3'
miRNA:   3'- gAGUGCCgGUggUGCCUGcACCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 47409 0.69 0.684921
Target:  5'- -gCGcCGGCCACuCugGGGCGggcuuGAACCc -3'
miRNA:   3'- gaGU-GCCGGUG-GugCCUGCac---CUUGG- -5'
28371 5' -56.9 NC_005946.1 + 35943 0.69 0.67779
Target:  5'- -cCACGGCCGCCgccagggcccucgcaGCGGgACGUuuGGAaguccugGCCg -3'
miRNA:   3'- gaGUGCCGGUGG---------------UGCC-UGCA--CCU-------UGG- -5'
28371 5' -56.9 NC_005946.1 + 67727 0.69 0.654248
Target:  5'- -cCAgGGCCACCACGGugaccuCGggcugaGGGACg -3'
miRNA:   3'- gaGUgCCGGUGGUGCCu-----GCa-----CCUUGg -5'
28371 5' -56.9 NC_005946.1 + 60141 0.77 0.273318
Target:  5'- gUCAgGGCUGCCGUGGugGUGGggUCc -3'
miRNA:   3'- gAGUgCCGGUGGUGCCugCACCuuGG- -5'
28371 5' -56.9 NC_005946.1 + 85061 0.73 0.410234
Target:  5'- aCUCugGGCagagcugcucCACaCACGGACGcGGAACa -3'
miRNA:   3'- -GAGugCCG----------GUG-GUGCCUGCaCCUUGg -5'
28371 5' -56.9 NC_005946.1 + 34405 0.73 0.445947
Target:  5'- -aCAUGGaCACCACGGgaACGUGaGGGCCc -3'
miRNA:   3'- gaGUGCCgGUGGUGCC--UGCAC-CUUGG- -5'
28371 5' -56.9 NC_005946.1 + 88149 0.72 0.464441
Target:  5'- gCUCA-GGCCcuguCCAgGGugGUgGGGACCa -3'
miRNA:   3'- -GAGUgCCGGu---GGUgCCugCA-CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 35467 0.71 0.562125
Target:  5'- aUCACGGCCGCUGUGGACucUGGGucagacgcuGCCa -3'
miRNA:   3'- gAGUGCCGGUGGUGCCUGc-ACCU---------UGG- -5'
28371 5' -56.9 NC_005946.1 + 44545 0.71 0.57124
Target:  5'- cCUCACGGCCcUgGCGGugugagGCGUcuugaggGGAGCCu -3'
miRNA:   3'- -GAGUGCCGGuGgUGCC------UGCA-------CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 82298 0.7 0.602878
Target:  5'- --gACGGCCACCcCGGuCaacaGGAGCCa -3'
miRNA:   3'- gagUGCCGGUGGuGCCuGca--CCUUGG- -5'
28371 5' -56.9 NC_005946.1 + 70617 0.7 0.627527
Target:  5'- cCUgAUGGCCGCUauguaGCGGACcauuacccccaagauGUGGAGCg -3'
miRNA:   3'- -GAgUGCCGGUGG-----UGCCUG---------------CACCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.