miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28378 3' -53.6 NC_005946.1 + 56084 0.66 0.937916
Target:  5'- aCCAUggcccUCA-GGCUCuCCAGgGUGAGg -3'
miRNA:   3'- -GGUGau---AGUgCCGAG-GGUCgUACUCg -5'
28378 3' -53.6 NC_005946.1 + 8100 0.66 0.932798
Target:  5'- cCC-CUGUcCAgGGUggCCAGgAUGAGCu -3'
miRNA:   3'- -GGuGAUA-GUgCCGagGGUCgUACUCG- -5'
28378 3' -53.6 NC_005946.1 + 69224 0.66 0.932798
Target:  5'- -gACUGUCAUGGCcccgUCCUGGaa-GGGCa -3'
miRNA:   3'- ggUGAUAGUGCCG----AGGGUCguaCUCG- -5'
28378 3' -53.6 NC_005946.1 + 27039 0.66 0.932272
Target:  5'- gCCAagucugcCUGUCGuCGGCgaggUCCGcCGUGAGCa -3'
miRNA:   3'- -GGU-------GAUAGU-GCCGa---GGGUcGUACUCG- -5'
28378 3' -53.6 NC_005946.1 + 100684 0.67 0.903342
Target:  5'- aCAUUGUCgcgcaguccacACGGCUCgCAGUAUGcGUc -3'
miRNA:   3'- gGUGAUAG-----------UGCCGAGgGUCGUACuCG- -5'
28378 3' -53.6 NC_005946.1 + 27486 0.67 0.896686
Target:  5'- gCCGCaGUCACGGCgUCCaacuGCcucAUGAGg -3'
miRNA:   3'- -GGUGaUAGUGCCG-AGGgu--CG---UACUCg -5'
28378 3' -53.6 NC_005946.1 + 35276 0.67 0.896686
Target:  5'- cCCGCUGcacCugGGUaggaCgGGCAUGGGCg -3'
miRNA:   3'- -GGUGAUa--GugCCGag--GgUCGUACUCG- -5'
28378 3' -53.6 NC_005946.1 + 99620 0.67 0.896006
Target:  5'- -aGCaGUCugGGCUgcucuccCCUGGCGUcGAGCa -3'
miRNA:   3'- ggUGaUAGugCCGA-------GGGUCGUA-CUCG- -5'
28378 3' -53.6 NC_005946.1 + 21749 0.67 0.88263
Target:  5'- cCCugUuuGUCAUGGCcCUgAGCGcGAGCc -3'
miRNA:   3'- -GGugA--UAGUGCCGaGGgUCGUaCUCG- -5'
28378 3' -53.6 NC_005946.1 + 61343 0.67 0.88263
Target:  5'- -gACguguugCACGGCUCCaAGgAUGAGUg -3'
miRNA:   3'- ggUGaua---GUGCCGAGGgUCgUACUCG- -5'
28378 3' -53.6 NC_005946.1 + 35602 0.79 0.300007
Target:  5'- gCCGCggcCugGGCUUCCAGCA-GAGCc -3'
miRNA:   3'- -GGUGauaGugCCGAGGGUCGUaCUCG- -5'
28378 3' -53.6 NC_005946.1 + 41137 1.14 0.001598
Target:  5'- gCCACUAUCACGGCUCCCAGCAUGAGCu -3'
miRNA:   3'- -GGUGAUAGUGCCGAGGGUCGUACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.