miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28417 5' -52.1 NC_005946.1 + 9718 0.66 0.969
Target:  5'- gCCCUGGacaugacGGCCauccugUUGUCggGGGUGAGUg -3'
miRNA:   3'- -GGGACUa------CCGGa-----AGUAGa-CUCACUCG- -5'
28417 5' -52.1 NC_005946.1 + 24470 0.66 0.965737
Target:  5'- gCCCUGAUguacuugaGGCCcgaacCGUCgaGAGUGaAGCc -3'
miRNA:   3'- -GGGACUA--------CCGGaa---GUAGa-CUCAC-UCG- -5'
28417 5' -52.1 NC_005946.1 + 12511 0.66 0.96224
Target:  5'- aUCCUGAUGGCCUgCGUUc-AGgccaGGGCc -3'
miRNA:   3'- -GGGACUACCGGAaGUAGacUCa---CUCG- -5'
28417 5' -52.1 NC_005946.1 + 71648 0.66 0.958502
Target:  5'- aCUCUGAUGGCaagaagcUCGUCaaGGUGAGg -3'
miRNA:   3'- -GGGACUACCGga-----AGUAGacUCACUCg -5'
28417 5' -52.1 NC_005946.1 + 15616 0.66 0.954518
Target:  5'- aCCgGA-GGCCUgag-CUGAG-GAGCg -3'
miRNA:   3'- gGGaCUaCCGGAaguaGACUCaCUCG- -5'
28417 5' -52.1 NC_005946.1 + 27498 0.67 0.947619
Target:  5'- cCCCUGGccuUGGCCgcagUCAcggcguccaacugccUCaUGAG-GAGCc -3'
miRNA:   3'- -GGGACU---ACCGGa---AGU---------------AG-ACUCaCUCG- -5'
28417 5' -52.1 NC_005946.1 + 56090 0.67 0.945792
Target:  5'- gCCUUGAccaUGGCCcUCAggcUCUccaGGGUGAGg -3'
miRNA:   3'- -GGGACU---ACCGGaAGU---AGA---CUCACUCg -5'
28417 5' -52.1 NC_005946.1 + 44538 0.67 0.936033
Target:  5'- gCCCUGgcGGUgUgaggCGUCUuGAGggGAGCc -3'
miRNA:   3'- -GGGACuaCCGgAa---GUAGA-CUCa-CUCG- -5'
28417 5' -52.1 NC_005946.1 + 26165 0.69 0.871586
Target:  5'- gCUCUGGUGagugaGCCUcUCGUCgGAG-GAGCa -3'
miRNA:   3'- -GGGACUAC-----CGGA-AGUAGaCUCaCUCG- -5'
28417 5' -52.1 NC_005946.1 + 95724 0.69 0.871586
Target:  5'- cCCCUGAUGGCCcUC-UCUGcGGcuccgcUGuGCa -3'
miRNA:   3'- -GGGACUACCGGaAGuAGAC-UC------ACuCG- -5'
28417 5' -52.1 NC_005946.1 + 8028 0.71 0.764309
Target:  5'- aCCCUGAUGGCg--CAgg-GAucGUGAGCg -3'
miRNA:   3'- -GGGACUACCGgaaGUagaCU--CACUCG- -5'
28417 5' -52.1 NC_005946.1 + 74631 1.13 0.002465
Target:  5'- uCCCUGAUGGCCUUCAUCUGAGUGAGCc -3'
miRNA:   3'- -GGGACUACCGGAAGUAGACUCACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.