Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28449 | 3' | -63.1 | NC_005946.1 | + | 42381 | 0.71 | 0.255143 |
|
Target: 5'- uCUGUCUccCGGGACCaaCGGGACCCu -3' miRNA: 3'- uGACAGGccGUCCUGGcgGCCCUGGG- -5' |
|||||||
| 28449 | 3' | -63.1 | NC_005946.1 | + | 41751 | 0.72 | 0.24353 |
|
Target: 5'- --gGUCCaggauGGUGGGGuauCCGUCGGGACCCc -3' miRNA: 3'- ugaCAGG-----CCGUCCU---GGCGGCCCUGGG- -5' |
|||||||
| 28449 | 3' | -63.1 | NC_005946.1 | + | 23096 | 0.73 | 0.191928 |
|
Target: 5'- aGCUGUuuGGgGgucuGGAUgaCGCUGGGACCCg -3' miRNA: 3'- -UGACAggCCgU----CCUG--GCGGCCCUGGG- -5' |
|||||||
| 28449 | 3' | -63.1 | NC_005946.1 | + | 76755 | 0.75 | 0.153943 |
|
Target: 5'- -aUGUUCGGCAGGGCaggcaggaacggCGCaaaGGGGCCCc -3' miRNA: 3'- ugACAGGCCGUCCUG------------GCGg--CCCUGGG- -5' |
|||||||
| 28449 | 3' | -63.1 | NC_005946.1 | + | 82807 | 0.75 | 0.139352 |
|
Target: 5'- -gUGUaCGGCAGGGCCGCCaGGcACCUg -3' miRNA: 3'- ugACAgGCCGUCCUGGCGGcCC-UGGG- -5' |
|||||||
| 28449 | 3' | -63.1 | NC_005946.1 | + | 103115 | 1.11 | 0.000356 |
|
Target: 5'- gACUGUCCGGCAGGACCGCCGGGACCCa -3' miRNA: 3'- -UGACAGGCCGUCCUGGCGGCCCUGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home