miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28466 3' -55.8 NC_005946.1 + 26904 0.82 0.147175
Target:  5'- cGGCCACgGAGGCGGCgUACGccagGGCCGGg -3'
miRNA:   3'- -CCGGUG-UUCUGCCGgAUGCa---CUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 93389 0.75 0.381077
Target:  5'- uGCCAUccuGAUGGCCUGCGUucaggccagGGCCGAc -3'
miRNA:   3'- cCGGUGuu-CUGCCGGAUGCA---------CUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 97054 0.71 0.569307
Target:  5'- gGGCCACGaaaacggAGGCGGCCUG-GUcACCGu -3'
miRNA:   3'- -CCGGUGU-------UCUGCCGGAUgCAcUGGCu -5'
28466 3' -55.8 NC_005946.1 + 42391 0.71 0.590947
Target:  5'- cGGCCGCAuAGucUGGCCUcccguugacgACGUGACCc- -3'
miRNA:   3'- -CCGGUGU-UCu-GCCGGA----------UGCACUGGcu -5'
28466 3' -55.8 NC_005946.1 + 23176 0.7 0.674016
Target:  5'- aGGCCGCGAGGaGGCagUACcUGGCCGc -3'
miRNA:   3'- -CCGGUGUUCUgCCGg-AUGcACUGGCu -5'
28466 3' -55.8 NC_005946.1 + 49758 0.69 0.684333
Target:  5'- gGGCCucgGGGAUGGCgaCUGCGgcugUGGCCGAa -3'
miRNA:   3'- -CCGGug-UUCUGCCG--GAUGC----ACUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 71054 0.69 0.694605
Target:  5'- aGCCugAAGGCGGga-GCGUGACCc- -3'
miRNA:   3'- cCGGugUUCUGCCggaUGCACUGGcu -5'
28466 3' -55.8 NC_005946.1 + 8020 0.68 0.748897
Target:  5'- uGGCCGgGAGGacccuggcuccguccUGGCCU--GUGGCCGGg -3'
miRNA:   3'- -CCGGUgUUCU---------------GCCGGAugCACUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 84696 0.68 0.764459
Target:  5'- uGGCCAagguGGACGGCCUcaaGCa-GACCa- -3'
miRNA:   3'- -CCGGUgu--UCUGCCGGA---UGcaCUGGcu -5'
28466 3' -55.8 NC_005946.1 + 84756 0.68 0.78347
Target:  5'- cGGCagagauAGACGGCCUgucugacaGCGUGAUCa- -3'
miRNA:   3'- -CCGgugu--UCUGCCGGA--------UGCACUGGcu -5'
28466 3' -55.8 NC_005946.1 + 77292 0.68 0.78347
Target:  5'- cGGCCGgaAAGACGuaCUugGCGUcGGCCGGg -3'
miRNA:   3'- -CCGGUg-UUCUGCcgGA--UGCA-CUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 66083 0.68 0.78347
Target:  5'- uGGCCGCGGcugcGGCGGCCUcucUGACUGc -3'
miRNA:   3'- -CCGGUGUU----CUGCCGGAugcACUGGCu -5'
28466 3' -55.8 NC_005946.1 + 53534 0.68 0.78347
Target:  5'- cGGCCAgaGAGAgGGCCgGCGggGACauaGAa -3'
miRNA:   3'- -CCGGUg-UUCUgCCGGaUGCa-CUGg--CU- -5'
28466 3' -55.8 NC_005946.1 + 33743 0.68 0.78347
Target:  5'- aGGCUggguuuugACGAGAUGGCCcACGgGGCCc- -3'
miRNA:   3'- -CCGG--------UGUUCUGCCGGaUGCaCUGGcu -5'
28466 3' -55.8 NC_005946.1 + 46695 0.67 0.792769
Target:  5'- aGGCCagACAccGCGGCCUGCGccuGCUGGg -3'
miRNA:   3'- -CCGG--UGUucUGCCGGAUGCac-UGGCU- -5'
28466 3' -55.8 NC_005946.1 + 101865 0.67 0.792769
Target:  5'- cGGCgUugGAGACGGCCagcaACGccACCGGg -3'
miRNA:   3'- -CCG-GugUUCUGCCGGa---UGCacUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 57443 0.67 0.80101
Target:  5'- gGGCUcccucugGCAGGGguuCGGCCUGCaUGACCc- -3'
miRNA:   3'- -CCGG-------UGUUCU---GCCGGAUGcACUGGcu -5'
28466 3' -55.8 NC_005946.1 + 82123 0.67 0.810909
Target:  5'- aGGCC-CAGGA-GGaUCUGCGcgagGGCCGAc -3'
miRNA:   3'- -CCGGuGUUCUgCC-GGAUGCa---CUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 17325 0.67 0.836841
Target:  5'- cGGCCugGGGGCaguuguGGCCUACaaGAUCa- -3'
miRNA:   3'- -CCGGugUUCUG------CCGGAUGcaCUGGcu -5'
28466 3' -55.8 NC_005946.1 + 8393 0.66 0.845111
Target:  5'- aGCCA-GAGACGGCagCUugGUGaACCa- -3'
miRNA:   3'- cCGGUgUUCUGCCG--GAugCAC-UGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.