miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28466 3' -55.8 NC_005946.1 + 42858 0.66 0.845111
Target:  5'- aGGCCGC-AGACGGUgUcCGU-ACCGu -3'
miRNA:   3'- -CCGGUGuUCUGCCGgAuGCAcUGGCu -5'
28466 3' -55.8 NC_005946.1 + 78930 0.66 0.845111
Target:  5'- aGCCu---GugGGCCUugGUGGCg-- -3'
miRNA:   3'- cCGGuguuCugCCGGAugCACUGgcu -5'
28466 3' -55.8 NC_005946.1 + 45088 0.66 0.853181
Target:  5'- gGGCCACAgAGGUGGCCaaaaugUugGUGAUUGc -3'
miRNA:   3'- -CCGGUGU-UCUGCCGG------AugCACUGGCu -5'
28466 3' -55.8 NC_005946.1 + 52554 0.66 0.853181
Target:  5'- gGGCUagggACAAGGCcauGGCagcgGCGuUGGCCGAg -3'
miRNA:   3'- -CCGG----UGUUCUG---CCGga--UGC-ACUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 92282 0.66 0.853181
Target:  5'- aGGUCAgGAgGAUGGCCgggcagaACcUGGCCGAg -3'
miRNA:   3'- -CCGGUgUU-CUGCCGGa------UGcACUGGCU- -5'
28466 3' -55.8 NC_005946.1 + 32647 0.66 0.876123
Target:  5'- uGGCCaACAAGAgGGUggACGccACCGGg -3'
miRNA:   3'- -CCGG-UGUUCUgCCGgaUGCacUGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.