Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 49758 | 0.69 | 0.684333 |
|
Target: 5'- gGGCCucgGGGAUGGCgaCUGCGgcugUGGCCGAa -3' miRNA: 3'- -CCGGug-UUCUGCCG--GAUGC----ACUGGCU- -5' |
|||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 23176 | 0.7 | 0.674016 |
|
Target: 5'- aGGCCGCGAGGaGGCagUACcUGGCCGc -3' miRNA: 3'- -CCGGUGUUCUgCCGg-AUGcACUGGCu -5' |
|||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 42391 | 0.71 | 0.590947 |
|
Target: 5'- cGGCCGCAuAGucUGGCCUcccguugacgACGUGACCc- -3' miRNA: 3'- -CCGGUGU-UCu-GCCGGA----------UGCACUGGcu -5' |
|||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 97054 | 0.71 | 0.569307 |
|
Target: 5'- gGGCCACGaaaacggAGGCGGCCUG-GUcACCGu -3' miRNA: 3'- -CCGGUGU-------UCUGCCGGAUgCAcUGGCu -5' |
|||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 93389 | 0.75 | 0.381077 |
|
Target: 5'- uGCCAUccuGAUGGCCUGCGUucaggccagGGCCGAc -3' miRNA: 3'- cCGGUGuu-CUGCCGGAUGCA---------CUGGCU- -5' |
|||||||
| 28466 | 3' | -55.8 | NC_005946.1 | + | 26904 | 0.82 | 0.147175 |
|
Target: 5'- cGGCCACgGAGGCGGCgUACGccagGGCCGGg -3' miRNA: 3'- -CCGGUG-UUCUGCCGgAUGCa---CUGGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home