Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28466 | 5' | -61.7 | NC_005946.1 | + | 60819 | 0.67 | 0.519109 |
Target: 5'- gGCCcuGGCACAgGUGCC--UCUGCCUCu -3' miRNA: 3'- gCGG--CCGUGU-CACGGgcAGAUGGGGc -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 43669 | 0.67 | 0.490625 |
Target: 5'- uGcCCGGCGCGGgggaagcgGaCCUGUUUACCCUc -3' miRNA: 3'- gC-GGCCGUGUCa-------C-GGGCAGAUGGGGc -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 41206 | 0.68 | 0.48129 |
Target: 5'- gGCCGGUcccacCAGUccagcccuGCCCGUCgggccaaccUGCCCCa -3' miRNA: 3'- gCGGCCGu----GUCA--------CGGGCAG---------AUGGGGc -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 45913 | 0.69 | 0.423758 |
Target: 5'- gGCCGGcCACGGgGCCCG-CguaaccguacgcgGCCCUGg -3' miRNA: 3'- gCGGCC-GUGUCaCGGGCaGa------------UGGGGC- -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 31979 | 0.69 | 0.393259 |
Target: 5'- -uCCGGgAgAGUGCCCcUCcgACCCCGg -3' miRNA: 3'- gcGGCCgUgUCACGGGcAGa-UGGGGC- -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 98558 | 0.7 | 0.368956 |
Target: 5'- aCGCCGGCACcucucagugcgAGUGCaCCGcgaCUGCCgUGg -3' miRNA: 3'- -GCGGCCGUG-----------UCACG-GGCa--GAUGGgGC- -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 98114 | 0.7 | 0.361087 |
Target: 5'- aCGuuGgGCACAGUGCgucaUCGUCgucgACCCCc -3' miRNA: 3'- -GCggC-CGUGUCACG----GGCAGa---UGGGGc -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 17213 | 0.71 | 0.32352 |
Target: 5'- gGUCgGGCcCcGUGCCCGUCaACCCCu -3' miRNA: 3'- gCGG-CCGuGuCACGGGCAGaUGGGGc -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 1495 | 0.71 | 0.302415 |
Target: 5'- gGUgGGCGCAG-GCCCuguuGUCUACuCCCa -3' miRNA: 3'- gCGgCCGUGUCaCGGG----CAGAUG-GGGc -5' |
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28466 | 5' | -61.7 | NC_005946.1 | + | 94594 | 0.74 | 0.212202 |
Target: 5'- -uCCGGCACAGUGCUCaGUCUccgcaguGCaCCCGg -3' miRNA: 3'- gcGGCCGUGUCACGGG-CAGA-------UG-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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