miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28485 3' -55.4 NC_005946.1 + 47855 0.66 0.87012
Target:  5'- gGGAUauaCGGCgAGGGCugUGACCUg-- -3'
miRNA:   3'- -CUUAg--GUUGgUCCCGugGCUGGAguc -5'
28485 3' -55.4 NC_005946.1 + 37351 0.66 0.87012
Target:  5'- aGggUCCuggccCCAGGGCACuCGcuuuCCgUCGGc -3'
miRNA:   3'- -CuuAGGuu---GGUCCCGUG-GCu---GG-AGUC- -5'
28485 3' -55.4 NC_005946.1 + 91764 0.66 0.837877
Target:  5'- uAGUCaugGACgAGGuGCACC-ACCUCAGg -3'
miRNA:   3'- cUUAGg--UUGgUCC-CGUGGcUGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 53750 0.67 0.811573
Target:  5'- aGAAcCCAAU--GGGCACUGuCCUCGGu -3'
miRNA:   3'- -CUUaGGUUGguCCCGUGGCuGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 70757 0.67 0.799675
Target:  5'- ---gCCu-CCAGGGCagcacucaagccugACgGACCUCAGg -3'
miRNA:   3'- cuuaGGuuGGUCCCG--------------UGgCUGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 32908 0.67 0.783706
Target:  5'- -----gAGCCAGGGUgaGCC-ACCUCAGg -3'
miRNA:   3'- cuuaggUUGGUCCCG--UGGcUGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 103670 0.68 0.744563
Target:  5'- ---cCCGACCAGGaCGCCGcCCUgGGc -3'
miRNA:   3'- cuuaGGUUGGUCCcGUGGCuGGAgUC- -5'
28485 3' -55.4 NC_005946.1 + 91524 0.68 0.734489
Target:  5'- uAGUCCuGGCCAGGGgAgCGGcgcuCCUCAGa -3'
miRNA:   3'- cUUAGG-UUGGUCCCgUgGCU----GGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 46119 0.69 0.672406
Target:  5'- --uUCCAAaaCAGGGCACCGuaACCgUCGGu -3'
miRNA:   3'- cuuAGGUUg-GUCCCGUGGC--UGG-AGUC- -5'
28485 3' -55.4 NC_005946.1 + 58661 0.7 0.651327
Target:  5'- cGggUCCGAgaaaccguCCAcGGGCuugACgGACCUCAGc -3'
miRNA:   3'- -CuuAGGUU--------GGU-CCCG---UGgCUGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 94665 0.7 0.651327
Target:  5'- ---cCCuGCuCAGGGguCCGACCUCGc -3'
miRNA:   3'- cuuaGGuUG-GUCCCguGGCUGGAGUc -5'
28485 3' -55.4 NC_005946.1 + 30731 0.71 0.577491
Target:  5'- gGggUCCAccACCccGGCACCGACgUCu- -3'
miRNA:   3'- -CuuAGGU--UGGucCCGUGGCUGgAGuc -5'
28485 3' -55.4 NC_005946.1 + 8269 0.72 0.525827
Target:  5'- --uUgCAGCCAGGaGC-UCGACCUCGGg -3'
miRNA:   3'- cuuAgGUUGGUCC-CGuGGCUGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 11162 0.73 0.466316
Target:  5'- cGggUCaCAGCaucaAGGGCACCGuCCUCc- -3'
miRNA:   3'- -CuuAG-GUUGg---UCCCGUGGCuGGAGuc -5'
28485 3' -55.4 NC_005946.1 + 38169 0.73 0.456733
Target:  5'- --cUCCAGguCCAGGGcCACCacgguGACCUCGGg -3'
miRNA:   3'- cuuAGGUU--GGUCCC-GUGG-----CUGGAGUC- -5'
28485 3' -55.4 NC_005946.1 + 79263 0.76 0.335001
Target:  5'- ---aCCAGCCAGGGgACCGugCagcUCAGg -3'
miRNA:   3'- cuuaGGUUGGUCCCgUGGCugG---AGUC- -5'
28485 3' -55.4 NC_005946.1 + 29530 0.8 0.180305
Target:  5'- uGggUCCAACCggucccagcGGGGCGCCugGAUCUCAGg -3'
miRNA:   3'- -CuuAGGUUGG---------UCCCGUGG--CUGGAGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.