Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28485 | 5' | -65.9 | NC_005946.1 | + | 48014 | 0.68 | 0.303379 |
Target: 5'- uGGCCGGGGGgGaGaGCgCCCacaaggUCaacgGGGAGGCc -3' miRNA: 3'- -CCGGCUCCCgC-C-CG-GGG------AG----UCCUCCG- -5' |
|||||||
28485 | 5' | -65.9 | NC_005946.1 | + | 10740 | 0.68 | 0.303379 |
Target: 5'- uGCUGGGGGCGGaGgUCCUCGcG-GGCa -3' miRNA: 3'- cCGGCUCCCGCC-CgGGGAGUcCuCCG- -5' |
|||||||
28485 | 5' | -65.9 | NC_005946.1 | + | 17570 | 0.68 | 0.303379 |
Target: 5'- cGGCCGGGcaGGCacuGGaCCuCCUCAGGcgcgagGGGCa -3' miRNA: 3'- -CCGGCUC--CCGc--CC-GG-GGAGUCC------UCCG- -5' |
|||||||
28485 | 5' | -65.9 | NC_005946.1 | + | 93097 | 0.66 | 0.41646 |
Target: 5'- gGGCCGAGGuGaC-GGCUgg-CAGGAGGUa -3' miRNA: 3'- -CCGGCUCC-C-GcCCGGggaGUCCUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home