miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 3' -61.6 NC_005946.1 + 82672 0.75 0.159718
Target:  5'- gGGCCCUaCGCGGgugcaauggCUCCCUCCCa -3'
miRNA:   3'- aCCGGGA-GCGUCagca-----GAGGGAGGGg -5'
28557 3' -61.6 NC_005946.1 + 35341 0.72 0.254768
Target:  5'- aGGaCCUCgGCAG-CGUCUCCCaggUCCCa -3'
miRNA:   3'- aCCgGGAG-CGUCaGCAGAGGGa--GGGG- -5'
28557 3' -61.6 NC_005946.1 + 9298 0.72 0.286169
Target:  5'- aGGuCCCUaGguGUCG-CUCCCUUCUCg -3'
miRNA:   3'- aCC-GGGAgCguCAGCaGAGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 24313 0.71 0.292804
Target:  5'- aGGUCCUcaCGCAGUcugccaCGUCUCCCcugcUCuCCCa -3'
miRNA:   3'- aCCGGGA--GCGUCA------GCAGAGGG----AG-GGG- -5'
28557 3' -61.6 NC_005946.1 + 22914 0.71 0.313427
Target:  5'- aGG-CCUCGCAcguGUCGUCgucugugCCUUCUCCg -3'
miRNA:   3'- aCCgGGAGCGU---CAGCAGa------GGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 10366 0.71 0.327777
Target:  5'- gUGGUCCUCGCAcGggUGUucCUCCgCUCCCUu -3'
miRNA:   3'- -ACCGGGAGCGU-Ca-GCA--GAGG-GAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 28195 0.7 0.350202
Target:  5'- cGG-UCUUGCcGUUGUUUCCCgUCCCCg -3'
miRNA:   3'- aCCgGGAGCGuCAGCAGAGGG-AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 42344 0.69 0.381763
Target:  5'- gGGCCC-CGC-GUCGUCcgCUaucagaUCCCCg -3'
miRNA:   3'- aCCGGGaGCGuCAGCAGa-GGg-----AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 4422 0.69 0.389943
Target:  5'- gGGUCCUCGCcauAGUCcacaggCCCUCCuCCg -3'
miRNA:   3'- aCCGGGAGCG---UCAGcaga--GGGAGG-GG- -5'
28557 3' -61.6 NC_005946.1 + 34627 0.69 0.415163
Target:  5'- gGGCCCUCaGCcucuGGUUGUCcUCCguggacgUCCCCg -3'
miRNA:   3'- aCCGGGAG-CG----UCAGCAG-AGGg------AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 64839 0.69 0.427269
Target:  5'- cGGCCCgagauccccgcgagCGcCAGUUG-CUCCCUugucgCCCCu -3'
miRNA:   3'- aCCGGGa-------------GC-GUCAGCaGAGGGA-----GGGG- -5'
28557 3' -61.6 NC_005946.1 + 102605 0.68 0.431643
Target:  5'- aUGG-CCUCGUAGUC-UUUCCUccuggacuccaugUCCCCg -3'
miRNA:   3'- -ACCgGGAGCGUCAGcAGAGGG-------------AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 75736 0.68 0.436044
Target:  5'- gGGCCCUCGCAauaucggcccugauGUCGUuggaCUCcaggaugucggcggCCUCUCCc -3'
miRNA:   3'- aCCGGGAGCGU--------------CAGCA----GAG--------------GGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 94551 0.68 0.438696
Target:  5'- aGGCaCCUccagagcuuuggagCGaCGGcggugucaUCGUCUCCUUCCCCu -3'
miRNA:   3'- aCCG-GGA--------------GC-GUC--------AGCAGAGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 35764 0.68 0.44047
Target:  5'- cUGGCCCUCGUauAGUCcccguagGUCaccacagCCCacuuaUCCCCg -3'
miRNA:   3'- -ACCGGGAGCG--UCAG-------CAGa------GGG-----AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 95152 0.68 0.450296
Target:  5'- aGGUCCUCGCGGgCaUCUCCag-CCCg -3'
miRNA:   3'- aCCGGGAGCGUCaGcAGAGGgagGGG- -5'
28557 3' -61.6 NC_005946.1 + 16610 0.68 0.468465
Target:  5'- uUGGCCCcgucaaCGCAGa---CUCuCCUCCCCu -3'
miRNA:   3'- -ACCGGGa-----GCGUCagcaGAG-GGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 80349 0.68 0.477689
Target:  5'- gGGCCCUCcgacguggaaGcCAGUCacgggcaUCCCUCCCUc -3'
miRNA:   3'- aCCGGGAG----------C-GUCAGcag----AGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 71771 0.67 0.496401
Target:  5'- cGGUCCUgGUGGggaaggUGUCUCaCUCCCUg -3'
miRNA:   3'- aCCGGGAgCGUCa-----GCAGAGgGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 22316 0.67 0.496401
Target:  5'- -cGCuCCUcCGUAGUCGgcacaCUCCCUCUCg -3'
miRNA:   3'- acCG-GGA-GCGUCAGCa----GAGGGAGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.