miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28557 3' -61.6 NC_005946.1 + 3745 0.67 0.525064
Target:  5'- gGGCCaCgaccaugaCGCcGUCGUCguccgaCCCUCCCa -3'
miRNA:   3'- aCCGG-Ga-------GCGuCAGCAGa-----GGGAGGGg -5'
28557 3' -61.6 NC_005946.1 + 4422 0.69 0.389943
Target:  5'- gGGUCCUCGCcauAGUCcacaggCCCUCCuCCg -3'
miRNA:   3'- aCCGGGAGCG---UCAGcaga--GGGAGG-GG- -5'
28557 3' -61.6 NC_005946.1 + 9298 0.72 0.286169
Target:  5'- aGGuCCCUaGguGUCG-CUCCCUUCUCg -3'
miRNA:   3'- aCC-GGGAgCguCAGCaGAGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 10366 0.71 0.327777
Target:  5'- gUGGUCCUCGCAcGggUGUucCUCCgCUCCCUu -3'
miRNA:   3'- -ACCGGGAGCGU-Ca-GCA--GAGG-GAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 11067 0.66 0.573118
Target:  5'- aGGgUCUCGUAcacgucccacacGUCGUCUguccucaCCCUCuCCCa -3'
miRNA:   3'- aCCgGGAGCGU------------CAGCAGA-------GGGAG-GGG- -5'
28557 3' -61.6 NC_005946.1 + 16610 0.68 0.468465
Target:  5'- uUGGCCCcgucaaCGCAGa---CUCuCCUCCCCu -3'
miRNA:   3'- -ACCGGGa-----GCGUCagcaGAG-GGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 22316 0.67 0.496401
Target:  5'- -cGCuCCUcCGUAGUCGgcacaCUCCCUCUCg -3'
miRNA:   3'- acCG-GGA-GCGUCAGCa----GAGGGAGGGg -5'
28557 3' -61.6 NC_005946.1 + 22494 0.66 0.594049
Target:  5'- gGGCCCU-GUaAGUCGg--UCCUCCUCu -3'
miRNA:   3'- aCCGGGAgCG-UCAGCagaGGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 22914 0.71 0.313427
Target:  5'- aGG-CCUCGCAcguGUCGUCgucugugCCUUCUCCg -3'
miRNA:   3'- aCCgGGAGCGU---CAGCAGa------GGGAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 24313 0.71 0.292804
Target:  5'- aGGUCCUcaCGCAGUcugccaCGUCUCCCcugcUCuCCCa -3'
miRNA:   3'- aCCGGGA--GCGUCA------GCAGAGGG----AG-GGG- -5'
28557 3' -61.6 NC_005946.1 + 24410 0.66 0.604061
Target:  5'- uUGGCCacgguCUCuGCGGcCuUCUCCCacgcgcUCCCCg -3'
miRNA:   3'- -ACCGG-----GAG-CGUCaGcAGAGGG------AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 26614 0.66 0.584063
Target:  5'- gGGUCCagGUAGUCcUUUgCCgUCCCCg -3'
miRNA:   3'- aCCGGGagCGUCAGcAGA-GGgAGGGG- -5'
28557 3' -61.6 NC_005946.1 + 28195 0.7 0.350202
Target:  5'- cGG-UCUUGCcGUUGUUUCCCgUCCCCg -3'
miRNA:   3'- aCCgGGAGCGuCAGCAGAGGG-AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 34627 0.69 0.415163
Target:  5'- gGGCCCUCaGCcucuGGUUGUCcUCCguggacgUCCCCg -3'
miRNA:   3'- aCCGGGAG-CG----UCAGCAG-AGGg------AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 35341 0.72 0.254768
Target:  5'- aGGaCCUCgGCAG-CGUCUCCCaggUCCCa -3'
miRNA:   3'- aCCgGGAG-CGUCaGCAGAGGGa--GGGG- -5'
28557 3' -61.6 NC_005946.1 + 35764 0.68 0.44047
Target:  5'- cUGGCCCUCGUauAGUCcccguagGUCaccacagCCCacuuaUCCCCg -3'
miRNA:   3'- -ACCGGGAGCG--UCAG-------CAGa------GGG-----AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 35928 0.66 0.574111
Target:  5'- gGGCCCUCGCAGcgggaCGUUUggaaguccuggCCgUCCUg -3'
miRNA:   3'- aCCGGGAGCGUCa----GCAGA-----------GGgAGGGg -5'
28557 3' -61.6 NC_005946.1 + 42344 0.69 0.381763
Target:  5'- gGGCCC-CGC-GUCGUCcgCUaucagaUCCCCg -3'
miRNA:   3'- aCCGGGaGCGuCAGCAGa-GGg-----AGGGG- -5'
28557 3' -61.6 NC_005946.1 + 44540 0.66 0.594049
Target:  5'- cGGCCCUgGCGGUgugaggCGUCUUgaggggagCCUCgUCg -3'
miRNA:   3'- aCCGGGAgCGUCA------GCAGAG--------GGAGgGG- -5'
28557 3' -61.6 NC_005946.1 + 48647 0.66 0.598051
Target:  5'- aGGCCCccaUCGCAGaaggGUCcaaggccauggccgCCCUCUCCu -3'
miRNA:   3'- aCCGGG---AGCGUCag--CAGa-------------GGGAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.