Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28567 | 3' | -53 | NC_005946.1 | + | 740 | 0.67 | 0.897136 |
Target: 5'- uGGCGUCGAGGUCCGAc-AGGaCCUUg -3' miRNA: 3'- gUUGCAGUUUCAGGUUccUCCgGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 3550 | 0.66 | 0.943586 |
Target: 5'- aCGACGUCuuuc-CCAAGaGGGGCCUg- -3' miRNA: 3'- -GUUGCAGuuucaGGUUC-CUCCGGGag -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 7031 | 0.67 | 0.890155 |
Target: 5'- -uGCGUCuuGGgu--GGGAuGGCCCUCa -3' miRNA: 3'- guUGCAGuuUCagguUCCU-CCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 8115 | 0.69 | 0.798148 |
Target: 5'- -cACGUCAGAgucccuccccuGUCCAGGGuGGCCa-- -3' miRNA: 3'- guUGCAGUUU-----------CAGGUUCCuCCGGgag -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 10685 | 0.71 | 0.686319 |
Target: 5'- uGACGgcCAgcAGGUCC-AGGAGGuCCCUCc -3' miRNA: 3'- gUUGCa-GU--UUCAGGuUCCUCC-GGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 20927 | 0.74 | 0.547144 |
Target: 5'- aCGACGugcUCGGAGgcaaggCCcAGGAGGCCCUg -3' miRNA: 3'- -GUUGC---AGUUUCa-----GGuUCCUCCGGGAg -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 21226 | 0.69 | 0.798148 |
Target: 5'- aCGGCGUCAGGGagaugcuggCCAAGGuGGacggCCUCa -3' miRNA: 3'- -GUUGCAGUUUCa--------GGUUCCuCCg---GGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 24358 | 0.74 | 0.547144 |
Target: 5'- aCAGCcuGUgGAAG-CCGggcuGGGAGGCCCUCu -3' miRNA: 3'- -GUUG--CAgUUUCaGGU----UCCUCCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 26309 | 0.73 | 0.621861 |
Target: 5'- -cACGUCAAAGUCCAGGGugaguGGagUCUCu -3' miRNA: 3'- guUGCAGUUUCAGGUUCCu----CCg-GGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 26958 | 0.66 | 0.928147 |
Target: 5'- uGGCGUCAGuGuUCCAGGcGGGCuuCCUCu -3' miRNA: 3'- gUUGCAGUUuC-AGGUUCcUCCG--GGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 27840 | 0.79 | 0.30916 |
Target: 5'- -----aCAAAGUCCAcGGGGGCCCUCc -3' miRNA: 3'- guugcaGUUUCAGGUuCCUCCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 35332 | 0.71 | 0.686319 |
Target: 5'- gCAGCGUCucccAGGUCCcaucccAGGGAGGCCg-- -3' miRNA: 3'- -GUUGCAGu---UUCAGG------UUCCUCCGGgag -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 35647 | 0.66 | 0.938703 |
Target: 5'- aCGACGagGAuaguGUCCAGGGAcaGGUCCcCa -3' miRNA: 3'- -GUUGCagUUu---CAGGUUCCU--CCGGGaG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 47739 | 0.79 | 0.30916 |
Target: 5'- aGGCGUCAGGGUCacucaCGAGGAGGUCCg- -3' miRNA: 3'- gUUGCAGUUUCAG-----GUUCCUCCGGGag -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 51764 | 0.7 | 0.778903 |
Target: 5'- ----aUCGAGGaCCGucGGAGGCCCUCc -3' miRNA: 3'- guugcAGUUUCaGGUu-CCUCCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 57877 | 0.74 | 0.536667 |
Target: 5'- gAGCGcccaCAAGGUCaaCGGGGAGGCCUUCu -3' miRNA: 3'- gUUGCa---GUUUCAG--GUUCCUCCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 60266 | 0.66 | 0.916532 |
Target: 5'- --uUGUCAGGggaauGUCCAGGGGGGCagUCu -3' miRNA: 3'- guuGCAGUUU-----CAGGUUCCUCCGggAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 61738 | 0.7 | 0.75807 |
Target: 5'- uGACGUCccccgugucguguAGGGUCCucuugucuGuGAGGCCCUCu -3' miRNA: 3'- gUUGCAG-------------UUUCAGGuu------C-CUCCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 64257 | 0.66 | 0.935648 |
Target: 5'- aCGGCGUCAGAggccgccugagccauGUCCAGGGccucccuGGUCUUUa -3' miRNA: 3'- -GUUGCAGUUU---------------CAGGUUCCu------CCGGGAG- -5' |
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28567 | 3' | -53 | NC_005946.1 | + | 67286 | 0.71 | 0.707514 |
Target: 5'- ---aGUCAGAGUCUAcGGcguAGGCCCUa -3' miRNA: 3'- guugCAGUUUCAGGUuCC---UCCGGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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