miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 63223 0.67 0.992805
Target:  5'- ---aCCACCGcAccGGCGACgCC-CGCg -3'
miRNA:   3'- uuuaGGUGGUuUuuCCGUUG-GGaGCG- -5'
2870 3' -49 NC_001493.1 + 59857 0.67 0.991681
Target:  5'- aAAAUUC-CCAguggugucgcAAAAGGCGGCCCcgUCGUc -3'
miRNA:   3'- -UUUAGGuGGU----------UUUUCCGUUGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 126864 0.69 0.971361
Target:  5'- -cGUCCGCCucGGGGGUcaucgAGCCCUgGUc -3'
miRNA:   3'- uuUAGGUGGuuUUUCCG-----UUGGGAgCG- -5'
2870 3' -49 NC_001493.1 + 132305 0.7 0.948708
Target:  5'- -cGUUCGCCcGAAGGGUucGACCCUCu- -3'
miRNA:   3'- uuUAGGUGGuUUUUCCG--UUGGGAGcg -5'
2870 3' -49 NC_001493.1 + 61408 0.66 0.996749
Target:  5'- uGGGUCCAUgGAuccuGGguACCCgCGCu -3'
miRNA:   3'- -UUUAGGUGgUUuuu-CCguUGGGaGCG- -5'
2870 3' -49 NC_001493.1 + 14235 0.67 0.993804
Target:  5'- uGAcgCCGaacgCGAGAcacAGGCAACCCUUGa -3'
miRNA:   3'- -UUuaGGUg---GUUUU---UCCGUUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 13455 0.68 0.981752
Target:  5'- cGAGUCUcCCAGGGGccGGUAGCCgauCUCGCa -3'
miRNA:   3'- -UUUAGGuGGUUUUU--CCGUUGG---GAGCG- -5'
2870 3' -49 NC_001493.1 + 102242 0.71 0.928342
Target:  5'- cAAUCC-CCGuuguGAGGCGGCCagggUCGCg -3'
miRNA:   3'- uUUAGGuGGUuu--UUCCGUUGGg---AGCG- -5'
2870 3' -49 NC_001493.1 + 39261 0.67 0.993804
Target:  5'- cAAUCCGCC-----GGUAACCC-CGUa -3'
miRNA:   3'- uUUAGGUGGuuuuuCCGUUGGGaGCG- -5'
2870 3' -49 NC_001493.1 + 13211 0.72 0.916512
Target:  5'- ---aUCACCcAGAGGGCGACCC-CGg -3'
miRNA:   3'- uuuaGGUGGuUUUUCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 25580 0.67 0.989019
Target:  5'- gGGGUCCACCGu--GGGUuuACUCguUCGCg -3'
miRNA:   3'- -UUUAGGUGGUuuuUCCGu-UGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 36361 0.67 0.992805
Target:  5'- ---gCCGCCcc---GGUAcaACCCUCGCu -3'
miRNA:   3'- uuuaGGUGGuuuuuCCGU--UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 63888 0.68 0.981752
Target:  5'- ---aCCACCAcAccGGCGACgCC-CGCg -3'
miRNA:   3'- uuuaGGUGGUuUuuCCGUUG-GGaGCG- -5'
2870 3' -49 NC_001493.1 + 11310 0.69 0.971361
Target:  5'- -cGUCCGCCucGGGGGUcaucgAGCCCUgGUc -3'
miRNA:   3'- uuUAGGUGGuuUUUCCG-----UUGGGAgCG- -5'
2870 3' -49 NC_001493.1 + 86143 0.7 0.953124
Target:  5'- cGGAUCCAUUGAAGAGGUAcaGCCCgucCGg -3'
miRNA:   3'- -UUUAGGUGGUUUUUCCGU--UGGGa--GCg -5'
2870 3' -49 NC_001493.1 + 16751 0.7 0.948708
Target:  5'- -cGUUCGCCcGAAGGGUucGACCCUCu- -3'
miRNA:   3'- uuUAGGUGGuUUUUCCG--UUGGGAGcg -5'
2870 3' -49 NC_001493.1 + 130747 0.66 0.997267
Target:  5'- aGGGUCCggACCAGGAAcccgccgacGGCGACCUUuccaccCGCg -3'
miRNA:   3'- -UUUAGG--UGGUUUUU---------CCGUUGGGA------GCG- -5'
2870 3' -49 NC_001493.1 + 42592 0.66 0.997267
Target:  5'- -uAUUCACCG--GAGGC--CUCUCGCc -3'
miRNA:   3'- uuUAGGUGGUuuUUCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 27410 0.66 0.995469
Target:  5'- ---aCCACCAGAGAGuGgAGCUgUCGa -3'
miRNA:   3'- uuuaGGUGGUUUUUC-CgUUGGgAGCg -5'
2870 3' -49 NC_001493.1 + 44283 0.66 0.994689
Target:  5'- -uAUCUACCGGu--GGC-ACCCUUGg -3'
miRNA:   3'- uuUAGGUGGUUuuuCCGuUGGGAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.