miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 28051 0.67 0.993804
Target:  5'- uGGAUCgACCGGAccGGGCGGCCgUCu- -3'
miRNA:   3'- -UUUAGgUGGUUUu-UCCGUUGGgAGcg -5'
2870 3' -49 NC_001493.1 + 35042 0.66 0.995321
Target:  5'- -cGUUCACCGGgucgaacGGGGGUGguuguacGCCCUCGUa -3'
miRNA:   3'- uuUAGGUGGUU-------UUUCCGU-------UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 36361 0.67 0.992805
Target:  5'- ---gCCGCCcc---GGUAcaACCCUCGCu -3'
miRNA:   3'- uuuaGGUGGuuuuuCCGU--UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 37380 0.66 0.997267
Target:  5'- ---cCCGCgCGGAGGGGCuGCCa-CGCg -3'
miRNA:   3'- uuuaGGUG-GUUUUUCCGuUGGgaGCG- -5'
2870 3' -49 NC_001493.1 + 37592 0.68 0.979471
Target:  5'- cAGAUCC-CCAu--GGGCAAggUCCUCGg -3'
miRNA:   3'- -UUUAGGuGGUuuuUCCGUU--GGGAGCg -5'
2870 3' -49 NC_001493.1 + 39261 0.67 0.993804
Target:  5'- cAAUCCGCC-----GGUAACCC-CGUa -3'
miRNA:   3'- uUUAGGUGGuuuuuCCGUUGGGaGCG- -5'
2870 3' -49 NC_001493.1 + 39516 0.7 0.948708
Target:  5'- cGGAUcCCACCAGAcccgcgauGGCAcauacGCCCUCGg -3'
miRNA:   3'- -UUUA-GGUGGUUUuu------CCGU-----UGGGAGCg -5'
2870 3' -49 NC_001493.1 + 39920 0.66 0.994689
Target:  5'- --cUCCAUCGAGAugaucGCuuCCCUCGUc -3'
miRNA:   3'- uuuAGGUGGUUUUuc---CGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 40901 0.68 0.985737
Target:  5'- ---aCCGCCAAcu-GuaAGCCCUCGUc -3'
miRNA:   3'- uuuaGGUGGUUuuuCcgUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 41362 0.66 0.996749
Target:  5'- ---cCCACCGAGAAuGCGACCaggUCGa -3'
miRNA:   3'- uuuaGGUGGUUUUUcCGUUGGg--AGCg -5'
2870 3' -49 NC_001493.1 + 42592 0.66 0.997267
Target:  5'- -uAUUCACCG--GAGGC--CUCUCGCc -3'
miRNA:   3'- uuUAGGUGGUuuUUCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 44283 0.66 0.994689
Target:  5'- -uAUCUACCGGu--GGC-ACCCUUGg -3'
miRNA:   3'- uuUAGGUGGUUuuuCCGuUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 46158 0.66 0.995469
Target:  5'- ----gCGCCGuuGGGauGCAGCCCaUCGCa -3'
miRNA:   3'- uuuagGUGGUuuUUC--CGUUGGG-AGCG- -5'
2870 3' -49 NC_001493.1 + 49534 0.68 0.985737
Target:  5'- ---aCCACCAAGAGGGguAucaccuuuCCCgUUGCg -3'
miRNA:   3'- uuuaGGUGGUUUUUCCguU--------GGG-AGCG- -5'
2870 3' -49 NC_001493.1 + 49624 0.66 0.996636
Target:  5'- uGAUCCGCagccucgcAGGUc-CCCUCGCa -3'
miRNA:   3'- uUUAGGUGguuuu---UCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 53391 0.69 0.971361
Target:  5'- gGAGUCCAUCAccgcgguGGCGAUCCcgaccaUCGCa -3'
miRNA:   3'- -UUUAGGUGGUuuuu---CCGUUGGG------AGCG- -5'
2870 3' -49 NC_001493.1 + 54826 0.66 0.996749
Target:  5'- cGAAUCCauACCGGGucguGGCAGCgCCagGCu -3'
miRNA:   3'- -UUUAGG--UGGUUUuu--CCGUUG-GGagCG- -5'
2870 3' -49 NC_001493.1 + 57488 0.69 0.976985
Target:  5'- cGAUUCAUCGAAcgcGGCcagcccGCCCUCGCc -3'
miRNA:   3'- uUUAGGUGGUUUuu-CCGu-----UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 58848 0.67 0.991681
Target:  5'- -cGUCCACCGAuuuguucucguaGAGGGCcgugAGCCggUCGCg -3'
miRNA:   3'- uuUAGGUGGUU------------UUUCCG----UUGGg-AGCG- -5'
2870 3' -49 NC_001493.1 + 59857 0.67 0.991681
Target:  5'- aAAAUUC-CCAguggugucgcAAAAGGCGGCCCcgUCGUc -3'
miRNA:   3'- -UUUAGGuGGU----------UUUUCCGUUGGG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.