miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 1049 1.12 0.00711
Target:  5'- gAAAUCCACCAAAAAGGCAACCCUCGCa -3'
miRNA:   3'- -UUUAGGUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 3181 0.66 0.995245
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgaucaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU--------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 9075 0.66 0.997267
Target:  5'- --cUCC-CCGAuGAGcGCGACCCgggucuuuugCGCg -3'
miRNA:   3'- uuuAGGuGGUUuUUC-CGUUGGGa---------GCG- -5'
2870 3' -49 NC_001493.1 + 10888 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 11310 0.69 0.971361
Target:  5'- -cGUCCGCCucGGGGGUcaucgAGCCCUgGUc -3'
miRNA:   3'- uuUAGGUGGuuUUUCCG-----UUGGGAgCG- -5'
2870 3' -49 NC_001493.1 + 13211 0.72 0.916512
Target:  5'- ---aUCACCcAGAGGGCGACCC-CGg -3'
miRNA:   3'- uuuaGGUGGuUUUUCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 13249 0.69 0.976985
Target:  5'- -----gAUCAAGAGGGUGAUCUUCGCg -3'
miRNA:   3'- uuuaggUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 13455 0.68 0.981752
Target:  5'- cGAGUCUcCCAGGGGccGGUAGCCgauCUCGCa -3'
miRNA:   3'- -UUUAGGuGGUUUUU--CCGUUGG---GAGCG- -5'
2870 3' -49 NC_001493.1 + 14235 0.67 0.993804
Target:  5'- uGAcgCCGaacgCGAGAcacAGGCAACCCUUGa -3'
miRNA:   3'- -UUuaGGUg---GUUUU---UCCGUUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 14919 0.66 0.997267
Target:  5'- cGGUCCGCCccauGGGGGCAggggggaagGgCUUCGCc -3'
miRNA:   3'- uUUAGGUGGuu--UUUCCGU---------UgGGAGCG- -5'
2870 3' -49 NC_001493.1 + 15193 0.66 0.997267
Target:  5'- aGGGUCCggACCAGGAAcccgccgacGGCGACCUUuccaccCGCg -3'
miRNA:   3'- -UUUAGG--UGGUUUUU---------CCGUUGGGA------GCG- -5'
2870 3' -49 NC_001493.1 + 16751 0.7 0.948708
Target:  5'- -cGUUCGCCcGAAGGGUucGACCCUCu- -3'
miRNA:   3'- uuUAGGUGGuUUUUCCG--UUGGGAGcg -5'
2870 3' -49 NC_001493.1 + 19902 0.66 0.994689
Target:  5'- gGAGUCgCGCCGgcccgaagGAGAGGUGAUuccgCCUCGUg -3'
miRNA:   3'- -UUUAG-GUGGU--------UUUUCCGUUG----GGAGCG- -5'
2870 3' -49 NC_001493.1 + 21394 0.66 0.997267
Target:  5'- --cUUCACCAGGGGcGGCGGCCUgaaggUCGg -3'
miRNA:   3'- uuuAGGUGGUUUUU-CCGUUGGG-----AGCg -5'
2870 3' -49 NC_001493.1 + 22831 0.76 0.713354
Target:  5'- --uUCCACCucuGAGGGUucccCCCUCGCc -3'
miRNA:   3'- uuuAGGUGGuu-UUUCCGuu--GGGAGCG- -5'
2870 3' -49 NC_001493.1 + 23837 0.74 0.823655
Target:  5'- uGAUCUagagGCCGAGAAGGCGGCUCUaugGCu -3'
miRNA:   3'- uUUAGG----UGGUUUUUCCGUUGGGAg--CG- -5'
2870 3' -49 NC_001493.1 + 24224 0.66 0.997267
Target:  5'- ---gUCACCGAGugguuGGCGACCCUg-- -3'
miRNA:   3'- uuuaGGUGGUUUuu---CCGUUGGGAgcg -5'
2870 3' -49 NC_001493.1 + 24953 0.74 0.841515
Target:  5'- aAAAUaCCACCAu--GGGCGACUgucugCUCGCg -3'
miRNA:   3'- -UUUA-GGUGGUuuuUCCGUUGG-----GAGCG- -5'
2870 3' -49 NC_001493.1 + 25580 0.67 0.989019
Target:  5'- gGGGUCCACCGu--GGGUuuACUCguUCGCg -3'
miRNA:   3'- -UUUAGGUGGUuuuUCCGu-UGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 27410 0.66 0.995469
Target:  5'- ---aCCACCAGAGAGuGgAGCUgUCGa -3'
miRNA:   3'- uuuaGGUGGUUUUUC-CgUUGGgAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.