miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 116603 1.12 0.00711
Target:  5'- gAAAUCCACCAAAAAGGCAACCCUCGCa -3'
miRNA:   3'- -UUUAGGUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 1049 1.12 0.00711
Target:  5'- gAAAUCCACCAAAAAGGCAACCCUCGCa -3'
miRNA:   3'- -UUUAGGUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 22831 0.76 0.713354
Target:  5'- --uUCCACCucuGAGGGUucccCCCUCGCc -3'
miRNA:   3'- uuuAGGUGGuu-UUUCCGuu--GGGAGCG- -5'
2870 3' -49 NC_001493.1 + 64920 0.75 0.765592
Target:  5'- uGAUCguCC-AGAGGGCGACCCUCa- -3'
miRNA:   3'- uUUAGguGGuUUUUCCGUUGGGAGcg -5'
2870 3' -49 NC_001493.1 + 23837 0.74 0.823655
Target:  5'- uGAUCUagagGCCGAGAAGGCGGCUCUaugGCu -3'
miRNA:   3'- uUUAGG----UGGUUUUUCCGUUGGGAg--CG- -5'
2870 3' -49 NC_001493.1 + 24953 0.74 0.841515
Target:  5'- aAAAUaCCACCAu--GGGCGACUgucugCUCGCg -3'
miRNA:   3'- -UUUA-GGUGGUuuuUCCGUUGG-----GAGCG- -5'
2870 3' -49 NC_001493.1 + 128765 0.72 0.916512
Target:  5'- ---aUCACCcAGAGGGCGACCC-CGg -3'
miRNA:   3'- uuuaGGUGGuUUUUCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 13211 0.72 0.916512
Target:  5'- ---aUCACCcAGAGGGCGACCC-CGg -3'
miRNA:   3'- uuuaGGUGGuUUUUCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 102242 0.71 0.928342
Target:  5'- cAAUCC-CCGuuguGAGGCGGCCagggUCGCg -3'
miRNA:   3'- uUUAGGuGGUuu--UUCCGUUGGg---AGCG- -5'
2870 3' -49 NC_001493.1 + 39516 0.7 0.948708
Target:  5'- cGGAUcCCACCAGAcccgcgauGGCAcauacGCCCUCGg -3'
miRNA:   3'- -UUUA-GGUGGUUUuu------CCGU-----UGGGAGCg -5'
2870 3' -49 NC_001493.1 + 16751 0.7 0.948708
Target:  5'- -cGUUCGCCcGAAGGGUucGACCCUCu- -3'
miRNA:   3'- uuUAGGUGGuUUUUCCG--UUGGGAGcg -5'
2870 3' -49 NC_001493.1 + 132305 0.7 0.948708
Target:  5'- -cGUUCGCCcGAAGGGUucGACCCUCu- -3'
miRNA:   3'- uuUAGGUGGuUUUUCCG--UUGGGAGcg -5'
2870 3' -49 NC_001493.1 + 93419 0.7 0.952694
Target:  5'- --uUCCGCCGAGGGGGUAaacucacACCCugUCGg -3'
miRNA:   3'- uuuAGGUGGUUUUUCCGU-------UGGG--AGCg -5'
2870 3' -49 NC_001493.1 + 102315 0.7 0.953124
Target:  5'- gGGGUCgCACCGA--AGGCuccCCCUCGg -3'
miRNA:   3'- -UUUAG-GUGGUUuuUCCGuu-GGGAGCg -5'
2870 3' -49 NC_001493.1 + 86143 0.7 0.953124
Target:  5'- cGGAUCCAUUGAAGAGGUAcaGCCCgucCGg -3'
miRNA:   3'- -UUUAGGUGGUUUUUCCGU--UGGGa--GCg -5'
2870 3' -49 NC_001493.1 + 63933 0.7 0.957276
Target:  5'- ---aCCACCAcAucGGCGACgCC-CGCg -3'
miRNA:   3'- uuuaGGUGGUuUuuCCGUUG-GGaGCG- -5'
2870 3' -49 NC_001493.1 + 91609 0.7 0.96117
Target:  5'- --cUCCGCCGGucgcGGGCGcACCCUcCGUc -3'
miRNA:   3'- uuuAGGUGGUUuu--UCCGU-UGGGA-GCG- -5'
2870 3' -49 NC_001493.1 + 107212 0.7 0.964811
Target:  5'- cGGUCgACCu-GAGGGCGGCCC-CGg -3'
miRNA:   3'- uUUAGgUGGuuUUUCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 108924 0.7 0.964811
Target:  5'- uGAAUCCGCCGucGA--CAGCCgUCGCg -3'
miRNA:   3'- -UUUAGGUGGUuuUUccGUUGGgAGCG- -5'
2870 3' -49 NC_001493.1 + 101955 0.69 0.971361
Target:  5'- ---gCCGCCc--AAGGCGGCCCcaUCGUu -3'
miRNA:   3'- uuuaGGUGGuuuUUCCGUUGGG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.