miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 88282 0.67 0.989019
Target:  5'- uGAGUCgCGCCuc-GAGGCgAACCUucucaUCGCg -3'
miRNA:   3'- -UUUAG-GUGGuuuUUCCG-UUGGG-----AGCG- -5'
2870 3' -49 NC_001493.1 + 61864 0.68 0.979232
Target:  5'- -uAUCCACgGGGAAGGCGauggcgaGCCCggUCGg -3'
miRNA:   3'- uuUAGGUGgUUUUUCCGU-------UGGG--AGCg -5'
2870 3' -49 NC_001493.1 + 10888 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 126442 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 110276 0.68 0.983837
Target:  5'- ---gCCACCAG--GGGCucAAUCUUCGCc -3'
miRNA:   3'- uuuaGGUGGUUuuUCCG--UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 40901 0.68 0.985737
Target:  5'- ---aCCGCCAAcu-GuaAGCCCUCGUc -3'
miRNA:   3'- uuuaGGUGGUUuuuCcgUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 49534 0.68 0.985737
Target:  5'- ---aCCACCAAGAGGGguAucaccuuuCCCgUUGCg -3'
miRNA:   3'- uuuaGGUGGUUUUUCCguU--------GGG-AGCG- -5'
2870 3' -49 NC_001493.1 + 108286 0.68 0.987296
Target:  5'- -uAUCCACgCGAAgGGGGCAugacagaccgaucGCgCUCGCg -3'
miRNA:   3'- uuUAGGUG-GUUU-UUCCGU-------------UGgGAGCG- -5'
2870 3' -49 NC_001493.1 + 96328 0.68 0.987461
Target:  5'- ----gCACCAGAcuGGCAACCCaCGa -3'
miRNA:   3'- uuuagGUGGUUUuuCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 57488 0.69 0.976985
Target:  5'- cGAUUCAUCGAAcgcGGCcagcccGCCCUCGCc -3'
miRNA:   3'- uUUAGGUGGUUUuu-CCGu-----UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 66342 0.69 0.976985
Target:  5'- gGGGUCgACCAGgucauAGAGGuCGuucugcccACCCUCGCc -3'
miRNA:   3'- -UUUAGgUGGUU-----UUUCC-GU--------UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 128803 0.69 0.976985
Target:  5'- -----gAUCAAGAGGGUGAUCUUCGCg -3'
miRNA:   3'- uuuaggUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 23837 0.74 0.823655
Target:  5'- uGAUCUagagGCCGAGAAGGCGGCUCUaugGCu -3'
miRNA:   3'- uUUAGG----UGGUUUUUCCGUUGGGAg--CG- -5'
2870 3' -49 NC_001493.1 + 24953 0.74 0.841515
Target:  5'- aAAAUaCCACCAu--GGGCGACUgucugCUCGCg -3'
miRNA:   3'- -UUUA-GGUGGUuuuUCCGUUGG-----GAGCG- -5'
2870 3' -49 NC_001493.1 + 39516 0.7 0.948708
Target:  5'- cGGAUcCCACCAGAcccgcgauGGCAcauacGCCCUCGg -3'
miRNA:   3'- -UUUA-GGUGGUUUuu------CCGU-----UGGGAGCg -5'
2870 3' -49 NC_001493.1 + 91609 0.7 0.96117
Target:  5'- --cUCCGCCGGucgcGGGCGcACCCUcCGUc -3'
miRNA:   3'- uuuAGGUGGUUuu--UCCGU-UGGGA-GCG- -5'
2870 3' -49 NC_001493.1 + 108924 0.7 0.964811
Target:  5'- uGAAUCCGCCGucGA--CAGCCgUCGCg -3'
miRNA:   3'- -UUUAGGUGGUuuUUccGUUGGgAGCG- -5'
2870 3' -49 NC_001493.1 + 101955 0.69 0.971361
Target:  5'- ---gCCGCCc--AAGGCGGCCCcaUCGUu -3'
miRNA:   3'- uuuaGGUGGuuuUUCCGUUGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 53391 0.69 0.971361
Target:  5'- gGAGUCCAUCAccgcgguGGCGAUCCcgaccaUCGCa -3'
miRNA:   3'- -UUUAGGUGGUuuuu---CCGUUGGG------AGCG- -5'
2870 3' -49 NC_001493.1 + 13249 0.69 0.976985
Target:  5'- -----gAUCAAGAGGGUGAUCUUCGCg -3'
miRNA:   3'- uuuaggUGGUUUUUCCGUUGGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.