miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 39920 0.66 0.994689
Target:  5'- --cUCCAUCGAGAugaucGCuuCCCUCGUc -3'
miRNA:   3'- uuuAGGUGGUUUUuc---CGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 14919 0.66 0.997267
Target:  5'- cGGUCCGCCccauGGGGGCAggggggaagGgCUUCGCc -3'
miRNA:   3'- uUUAGGUGGuu--UUUCCGU---------UgGGAGCG- -5'
2870 3' -49 NC_001493.1 + 42592 0.66 0.997267
Target:  5'- -uAUUCACCG--GAGGC--CUCUCGCc -3'
miRNA:   3'- uuUAGGUGGUuuUUCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 44283 0.66 0.994689
Target:  5'- -uAUCUACCGGu--GGC-ACCCUUGg -3'
miRNA:   3'- uuUAGGUGGUUuuuCCGuUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 9075 0.66 0.997267
Target:  5'- --cUCC-CCGAuGAGcGCGACCCgggucuuuugCGCg -3'
miRNA:   3'- uuuAGGuGGUUuUUC-CGUUGGGa---------GCG- -5'
2870 3' -49 NC_001493.1 + 24224 0.66 0.997267
Target:  5'- ---gUCACCGAGugguuGGCGACCCUg-- -3'
miRNA:   3'- uuuaGGUGGUUUuu---CCGUUGGGAgcg -5'
2870 3' -49 NC_001493.1 + 89923 0.66 0.997267
Target:  5'- ---aCCACCcucuGGGGGaGCucguauuCCCUCGCg -3'
miRNA:   3'- uuuaGGUGGu---UUUUC-CGuu-----GGGAGCG- -5'
2870 3' -49 NC_001493.1 + 124630 0.66 0.997267
Target:  5'- --cUCC-CCGAuGAGcGCGACCCgggucuuuugCGCg -3'
miRNA:   3'- uuuAGGuGGUUuUUC-CGUUGGGa---------GCG- -5'
2870 3' -49 NC_001493.1 + 108707 0.66 0.997267
Target:  5'- cGGGUCCAUCGc--AGGCGAUggUCGCa -3'
miRNA:   3'- -UUUAGGUGGUuuuUCCGUUGggAGCG- -5'
2870 3' -49 NC_001493.1 + 41362 0.66 0.996749
Target:  5'- ---cCCACCGAGAAuGCGACCaggUCGa -3'
miRNA:   3'- uuuaGGUGGUUUUUcCGUUGGg--AGCg -5'
2870 3' -49 NC_001493.1 + 49624 0.66 0.996636
Target:  5'- uGAUCCGCagccucgcAGGUc-CCCUCGCa -3'
miRNA:   3'- uUUAGGUGguuuu---UCCGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 46158 0.66 0.995469
Target:  5'- ----gCGCCGuuGGGauGCAGCCCaUCGCa -3'
miRNA:   3'- uuuagGUGGUuuUUC--CGUUGGG-AGCG- -5'
2870 3' -49 NC_001493.1 + 86566 0.66 0.996152
Target:  5'- ---aCCaACCAGGAAGGCAuccCCCcCGa -3'
miRNA:   3'- uuuaGG-UGGUUUUUCCGUu--GGGaGCg -5'
2870 3' -49 NC_001493.1 + 27410 0.66 0.995469
Target:  5'- ---aCCACCAGAGAGuGgAGCUgUCGa -3'
miRNA:   3'- uuuaGGUGGUUUUUC-CgUUGGgAGCg -5'
2870 3' -49 NC_001493.1 + 35042 0.66 0.995321
Target:  5'- -cGUUCACCGGgucgaacGGGGGUGguuguacGCCCUCGUa -3'
miRNA:   3'- uuUAGGUGGUU-------UUUCCGU-------UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 61408 0.66 0.996749
Target:  5'- uGGGUCCAUgGAuccuGGguACCCgCGCu -3'
miRNA:   3'- -UUUAGGUGgUUuuu-CCguUGGGaGCG- -5'
2870 3' -49 NC_001493.1 + 118736 0.66 0.994606
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgauaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU-------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 54826 0.66 0.996749
Target:  5'- cGAAUCCauACCGGGucguGGCAGCgCCagGCu -3'
miRNA:   3'- -UUUAGG--UGGUUUuu--CCGUUG-GGagCG- -5'
2870 3' -49 NC_001493.1 + 19902 0.66 0.994689
Target:  5'- gGAGUCgCGCCGgcccgaagGAGAGGUGAUuccgCCUCGUg -3'
miRNA:   3'- -UUUAG-GUGGU--------UUUUCCGUUG----GGAGCG- -5'
2870 3' -49 NC_001493.1 + 3181 0.66 0.995245
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgaucaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU--------------UGGGa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.