miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 96328 0.68 0.987461
Target:  5'- ----gCACCAGAcuGGCAACCCaCGa -3'
miRNA:   3'- uuuagGUGGUUUuuCCGUUGGGaGCg -5'
2870 3' -49 NC_001493.1 + 108286 0.68 0.987296
Target:  5'- -uAUCCACgCGAAgGGGGCAugacagaccgaucGCgCUCGCg -3'
miRNA:   3'- uuUAGGUG-GUUU-UUCCGU-------------UGgGAGCG- -5'
2870 3' -49 NC_001493.1 + 49534 0.68 0.985737
Target:  5'- ---aCCACCAAGAGGGguAucaccuuuCCCgUUGCg -3'
miRNA:   3'- uuuaGGUGGUUUUUCCguU--------GGG-AGCG- -5'
2870 3' -49 NC_001493.1 + 40901 0.68 0.985737
Target:  5'- ---aCCGCCAAcu-GuaAGCCCUCGUc -3'
miRNA:   3'- uuuaGGUGGUUuuuCcgUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 110276 0.68 0.983837
Target:  5'- ---gCCACCAG--GGGCucAAUCUUCGCc -3'
miRNA:   3'- uuuaGGUGGUUuuUCCG--UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 10888 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 126442 0.68 0.982609
Target:  5'- -uGUCgCAcCCGGGGAGGCccgugucggguauccGAUCCUCGCc -3'
miRNA:   3'- uuUAG-GU-GGUUUUUCCG---------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 13455 0.68 0.981752
Target:  5'- cGAGUCUcCCAGGGGccGGUAGCCgauCUCGCa -3'
miRNA:   3'- -UUUAGGuGGUUUUU--CCGUUGG---GAGCG- -5'
2870 3' -49 NC_001493.1 + 129009 0.68 0.981752
Target:  5'- cGAGUCUcCCAGGGGccGGUAGCCgauCUCGCa -3'
miRNA:   3'- -UUUAGGuGGUUUUU--CCGUUGG---GAGCG- -5'
2870 3' -49 NC_001493.1 + 63888 0.68 0.981752
Target:  5'- ---aCCACCAcAccGGCGACgCC-CGCg -3'
miRNA:   3'- uuuaGGUGGUuUuuCCGUUG-GGaGCG- -5'
2870 3' -49 NC_001493.1 + 37592 0.68 0.979471
Target:  5'- cAGAUCC-CCAu--GGGCAAggUCCUCGg -3'
miRNA:   3'- -UUUAGGuGGUuuuUCCGUU--GGGAGCg -5'
2870 3' -49 NC_001493.1 + 61864 0.68 0.979232
Target:  5'- -uAUCCACgGGGAAGGCGauggcgaGCCCggUCGg -3'
miRNA:   3'- uuUAGGUGgUUUUUCCGU-------UGGG--AGCg -5'
2870 3' -49 NC_001493.1 + 13249 0.69 0.976985
Target:  5'- -----gAUCAAGAGGGUGAUCUUCGCg -3'
miRNA:   3'- uuuaggUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 128803 0.69 0.976985
Target:  5'- -----gAUCAAGAGGGUGAUCUUCGCg -3'
miRNA:   3'- uuuaggUGGUUUUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 66342 0.69 0.976985
Target:  5'- gGGGUCgACCAGgucauAGAGGuCGuucugcccACCCUCGCc -3'
miRNA:   3'- -UUUAGgUGGUU-----UUUCC-GU--------UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 57488 0.69 0.976985
Target:  5'- cGAUUCAUCGAAcgcGGCcagcccGCCCUCGCc -3'
miRNA:   3'- uUUAGGUGGUUUuu-CCGu-----UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 78578 0.69 0.974284
Target:  5'- uGGGUCaACCAAAAAucGGCAcACCC-CGCa -3'
miRNA:   3'- -UUUAGgUGGUUUUU--CCGU-UGGGaGCG- -5'
2870 3' -49 NC_001493.1 + 11310 0.69 0.971361
Target:  5'- -cGUCCGCCucGGGGGUcaucgAGCCCUgGUc -3'
miRNA:   3'- uuUAGGUGGuuUUUCCG-----UUGGGAgCG- -5'
2870 3' -49 NC_001493.1 + 126864 0.69 0.971361
Target:  5'- -cGUCCGCCucGGGGGUcaucgAGCCCUgGUc -3'
miRNA:   3'- uuUAGGUGGuuUUUCCG-----UUGGGAgCG- -5'
2870 3' -49 NC_001493.1 + 101955 0.69 0.971361
Target:  5'- ---gCCGCCc--AAGGCGGCCCcaUCGUu -3'
miRNA:   3'- uuuaGGUGGuuuUUCCGUUGGG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.