miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2870 3' -49 NC_001493.1 + 35042 0.66 0.995321
Target:  5'- -cGUUCACCGGgucgaacGGGGGUGguuguacGCCCUCGUa -3'
miRNA:   3'- uuUAGGUGGUU-------UUUCCGU-------UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 3181 0.66 0.995245
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgaucaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU--------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 19902 0.66 0.994689
Target:  5'- gGAGUCgCGCCGgcccgaagGAGAGGUGAUuccgCCUCGUg -3'
miRNA:   3'- -UUUAG-GUGGU--------UUUUCCGUUG----GGAGCG- -5'
2870 3' -49 NC_001493.1 + 44283 0.66 0.994689
Target:  5'- -uAUCUACCGGu--GGC-ACCCUUGg -3'
miRNA:   3'- uuUAGGUGGUUuuuCCGuUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 39920 0.66 0.994689
Target:  5'- --cUCCAUCGAGAugaucGCuuCCCUCGUc -3'
miRNA:   3'- uuuAGGUGGUUUUuc---CGuuGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 118736 0.66 0.994606
Target:  5'- --cUCCACCGGAGGGuGUAcaucgucgauaccACCCcggCGCu -3'
miRNA:   3'- uuuAGGUGGUUUUUC-CGU-------------UGGGa--GCG- -5'
2870 3' -49 NC_001493.1 + 39261 0.67 0.993804
Target:  5'- cAAUCCGCC-----GGUAACCC-CGUa -3'
miRNA:   3'- uUUAGGUGGuuuuuCCGUUGGGaGCG- -5'
2870 3' -49 NC_001493.1 + 62101 0.67 0.993804
Target:  5'- gGGAUCCGCCGGAuu--CGACCuCUCGg -3'
miRNA:   3'- -UUUAGGUGGUUUuuccGUUGG-GAGCg -5'
2870 3' -49 NC_001493.1 + 28051 0.67 0.993804
Target:  5'- uGGAUCgACCGGAccGGGCGGCCgUCu- -3'
miRNA:   3'- -UUUAGgUGGUUUu-UCCGUUGGgAGcg -5'
2870 3' -49 NC_001493.1 + 14235 0.67 0.993804
Target:  5'- uGAcgCCGaacgCGAGAcacAGGCAACCCUUGa -3'
miRNA:   3'- -UUuaGGUg---GUUUU---UCCGUUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 129789 0.67 0.993804
Target:  5'- uGAcgCCGaacgCGAGAcacAGGCAACCCUUGa -3'
miRNA:   3'- -UUuaGGUg---GUUUU---UCCGUUGGGAGCg -5'
2870 3' -49 NC_001493.1 + 80200 0.67 0.992805
Target:  5'- gGAAUCaCACCGAuccGGGGCggUCUgcUCGUg -3'
miRNA:   3'- -UUUAG-GUGGUUu--UUCCGuuGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 36361 0.67 0.992805
Target:  5'- ---gCCGCCcc---GGUAcaACCCUCGCu -3'
miRNA:   3'- uuuaGGUGGuuuuuCCGU--UGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 112086 0.67 0.992805
Target:  5'- cGAUCCACgGGu--GGUauuauugcuaucGACCCUCGUc -3'
miRNA:   3'- uUUAGGUGgUUuuuCCG------------UUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 63223 0.67 0.992805
Target:  5'- ---aCCACCGcAccGGCGACgCC-CGCg -3'
miRNA:   3'- uuuaGGUGGUuUuuCCGUUG-GGaGCG- -5'
2870 3' -49 NC_001493.1 + 59857 0.67 0.991681
Target:  5'- aAAAUUC-CCAguggugucgcAAAAGGCGGCCCcgUCGUc -3'
miRNA:   3'- -UUUAGGuGGU----------UUUUCCGUUGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 58848 0.67 0.991681
Target:  5'- -cGUCCACCGAuuuguucucguaGAGGGCcgugAGCCggUCGCg -3'
miRNA:   3'- uuUAGGUGGUU------------UUUCCG----UUGGg-AGCG- -5'
2870 3' -49 NC_001493.1 + 90299 0.67 0.990422
Target:  5'- --uUCUcagGCCccuGAGGUAACCCUUGUc -3'
miRNA:   3'- uuuAGG---UGGuuuUUCCGUUGGGAGCG- -5'
2870 3' -49 NC_001493.1 + 25580 0.67 0.989019
Target:  5'- gGGGUCCACCGu--GGGUuuACUCguUCGCg -3'
miRNA:   3'- -UUUAGGUGGUuuuUCCGu-UGGG--AGCG- -5'
2870 3' -49 NC_001493.1 + 88282 0.67 0.989019
Target:  5'- uGAGUCgCGCCuc-GAGGCgAACCUucucaUCGCg -3'
miRNA:   3'- -UUUAG-GUGGuuuUUCCG-UUGGG-----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.