miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
2870	5'	-53.8	NC_001493.1	+	48634	0.67	0.922609
	Target:  5'- gGGAUaGCG-CGGCGAUcGUGgGUGGCa -3' miRNA:   3'- -CCUGcUGCuGCCGCUAcUAC-UACCGa -5'
2870	5'	-53.8	NC_001493.1	+	109081	0.67	0.938236
	Target:  5'- cGACGGCugucGACGGCGGauucaucggguUGAUGGgaaagugucUGGCg -3' miRNA:   3'- cCUGCUG----CUGCCGCU-----------ACUACU---------ACCGa -5'
2870	5'	-53.8	NC_001493.1	+	114581	0.67	0.938236
	Target:  5'- cGGAUGGCGuGCGGaCGGaGGUGuGUGGUUu -3' miRNA:   3'- -CCUGCUGC-UGCC-GCUaCUAC-UACCGA- -5'
2870	5'	-53.8	NC_001493.1	+	61872	0.66	0.963004
	Target:  5'- gGGAaGGCGAUGGCGAgcccGGUcGGCa -3' miRNA:   3'- -CCUgCUGCUGCCGCUacuaCUA-CCGa -5'
2870	5'	-53.8	NC_001493.1	+	124704	0.66	0.955684
	Target:  5'- cGGgGAUGGCGGCGAggGggGA-GGCc -3' miRNA:   3'- cCUgCUGCUGCCGCUa-CuaCUaCCGa -5'
2870	5'	-53.8	NC_001493.1	+	9149	0.66	0.955684
	Target:  5'- cGGgGAUGGCGGCGAggGggGA-GGCc -3' miRNA:   3'- cCUgCUGCUGCCGCUa-CuaCUaCCGa -5'
2870	5'	-53.8	NC_001493.1	+	55705	0.66	0.955684
	Target:  5'- aGGGCGGaGAUGGCGAaacuacgGGUGAcgGGUUu -3' miRNA:   3'- -CCUGCUgCUGCCGCUa------CUACUa-CCGA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home