Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2870 | 5' | -53.8 | NC_001493.1 | + | 110441 | 0.76 | 0.513588 |
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Target: 5'- -cGCGGCGAUGGCGAagauUGAgccccUGGUGGCa -3' miRNA: 3'- ccUGCUGCUGCCGCU----ACU-----ACUACCGa -5' |
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| 2870 | 5' | -53.8 | NC_001493.1 | + | 24661 | 0.76 | 0.494008 |
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Target: 5'- uGAUGAUGAUGGUGGUGAUGAUGa-- -3' miRNA: 3'- cCUGCUGCUGCCGCUACUACUACcga -5' |
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| 2870 | 5' | -53.8 | NC_001493.1 | + | 129675 | 0.8 | 0.306953 |
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Target: 5'- gGGugGugG-UGGCGAUGggGGUGGCg -3' miRNA: 3'- -CCugCugCuGCCGCUACuaCUACCGa -5' |
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| 2870 | 5' | -53.8 | NC_001493.1 | + | 14120 | 0.8 | 0.306953 |
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Target: 5'- gGGugGugG-UGGCGAUGggGGUGGCg -3' miRNA: 3'- -CCugCugCuGCCGCUACuaCUACCGa -5' |
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| 2870 | 5' | -53.8 | NC_001493.1 | + | 24637 | 0.87 | 0.118179 |
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Target: 5'- uGAUGAUGAUGGUGAUGAUGAUGGUg -3' miRNA: 3'- cCUGCUGCUGCCGCUACUACUACCGa -5' |
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| 2870 | 5' | -53.8 | NC_001493.1 | + | 1014 | 1.09 | 0.004399 |
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Target: 5'- uGGACGACGACGGCGAUGAUGAUGGCUu -3' miRNA: 3'- -CCUGCUGCUGCCGCUACUACUACCGA- -5' |
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| 2870 | 5' | -53.8 | NC_001493.1 | + | 116568 | 1.09 | 0.004399 |
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Target: 5'- uGGACGACGACGGCGAUGAUGAUGGCUu -3' miRNA: 3'- -CCUGCUGCUGCCGCUACUACUACCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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