miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 82297 0.66 0.890505
Target:  5'- cCUCGcaugaGCUCcaccuGGAAGAccucgaGCCUCAUCCCa -3'
miRNA:   3'- -GAGCc----UGAGc----CCUUCU------UGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 82310 0.73 0.537857
Target:  5'- aUCGGAuCUuugacgaguaCGGGAAGAAUuacacacucgcgCUCGCCCCg -3'
miRNA:   3'- gAGCCU-GA----------GCCCUUCUUG------------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 85540 0.66 0.921173
Target:  5'- -aUGGACUCGGugauugGAAGGGCCgUGCCgCg -3'
miRNA:   3'- gaGCCUGAGCC------CUUCUUGGaGUGGgG- -5'
2871 5' -55.9 NC_001493.1 + 88836 0.8 0.241892
Target:  5'- --gGGAUUCGGGGAGAcCCUCAauauCCCCg -3'
miRNA:   3'- gagCCUGAGCCCUUCUuGGAGU----GGGG- -5'
2871 5' -55.9 NC_001493.1 + 89407 0.66 0.903469
Target:  5'- -cCGGGgggagaaguguCUCGGGcccGAugCUCGCCCg -3'
miRNA:   3'- gaGCCU-----------GAGCCCuu-CUugGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 91848 0.71 0.648971
Target:  5'- ----uGCUCGGGggGGACCcggCGCCCa -3'
miRNA:   3'- gagccUGAGCCCuuCUUGGa--GUGGGg -5'
2871 5' -55.9 NC_001493.1 + 92803 0.68 0.830036
Target:  5'- aUCGGgacGCUCcGGucGAG-CUCGCCCCa -3'
miRNA:   3'- gAGCC---UGAGcCCuuCUUgGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 95602 0.66 0.921173
Target:  5'- -cCGGGCgagagaCGGGugguGGACCUC-CCCg -3'
miRNA:   3'- gaGCCUGa-----GCCCuu--CUUGGAGuGGGg -5'
2871 5' -55.9 NC_001493.1 + 95953 0.68 0.810387
Target:  5'- -aCGGACUgggUGGaGAAGAACCgugccuggacguggUCACuCCCg -3'
miRNA:   3'- gaGCCUGA---GCC-CUUCUUGG--------------AGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 96400 0.68 0.830036
Target:  5'- gUCGacuacuCUCGaGGGAGAACUUCAUCCg -3'
miRNA:   3'- gAGCcu----GAGC-CCUUCUUGGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 97147 0.72 0.602127
Target:  5'- uUCGGACacgggGGGGAuuacaacccaacaccGAACCUCACCCa -3'
miRNA:   3'- gAGCCUGag---CCCUU---------------CUUGGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 103372 0.67 0.861911
Target:  5'- aUCuGAUcaCGGGggGaAACC-CGCCCCa -3'
miRNA:   3'- gAGcCUGa-GCCCuuC-UUGGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 106273 0.68 0.813
Target:  5'- -aCGGGCUCaGuGA--AACCUUGCCCCu -3'
miRNA:   3'- gaGCCUGAGcC-CUucUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 112564 0.66 0.903469
Target:  5'- cCUCGauCUCGGucGGGAACCUCACaCCg -3'
miRNA:   3'- -GAGCcuGAGCCc-UUCUUGGAGUGgGG- -5'
2871 5' -55.9 NC_001493.1 + 112979 0.71 0.669296
Target:  5'- -aUGGGCUCgGGGAAGGAUCaCGCCUg -3'
miRNA:   3'- gaGCCUGAG-CCCUUCUUGGaGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 118671 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 118690 0.7 0.742906
Target:  5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3'
miRNA:   3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 119214 0.66 0.911994
Target:  5'- cCUCGGGCgacucaaCGGGGaucccgaacggaaggGGGAgUUCACCgCCg -3'
miRNA:   3'- -GAGCCUGa------GCCCU---------------UCUUgGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 119688 0.67 0.876641
Target:  5'- cCUCgGGAC-CGGGGugGGAACaacgaACCCCc -3'
miRNA:   3'- -GAG-CCUGaGCCCU--UCUUGgag--UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 121092 0.66 0.915507
Target:  5'- -cCGGACUugggCGGGAGGAGCga-GCCgCg -3'
miRNA:   3'- gaGCCUGA----GCCCUUCUUGgagUGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.