miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 30503 0.66 0.921173
Target:  5'- uCUCGGuCUgucCGGGgcGAucccccuuGCCgucaaCGCCCCg -3'
miRNA:   3'- -GAGCCuGA---GCCCuuCU--------UGGa----GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 33056 0.67 0.876641
Target:  5'- -cCGaGCUCGGGGAGGucuACaCgagcgCACCCCc -3'
miRNA:   3'- gaGCcUGAGCCCUUCU---UG-Ga----GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 34087 0.74 0.48933
Target:  5'- gCUCgGGGCUCGGGAguuGGGACacgCuCCCCg -3'
miRNA:   3'- -GAG-CCUGAGCCCU---UCUUGga-GuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 39876 0.76 0.382426
Target:  5'- aUCGGA-UCGGGggGuuuuucAACCUCACCgCCu -3'
miRNA:   3'- gAGCCUgAGCCCuuC------UUGGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 44183 0.66 0.915507
Target:  5'- uUCGGGCcCuGGggGAGCCgaUCAgCCg -3'
miRNA:   3'- gAGCCUGaGcCCuuCUUGG--AGUgGGg -5'
2871 5' -55.9 NC_001493.1 + 46484 0.66 0.896452
Target:  5'- uUCGGACcaucgUCGGGAacgggagAGGAgaUCACgCCCg -3'
miRNA:   3'- gAGCCUG-----AGCCCU-------UCUUggAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 47113 0.67 0.875206
Target:  5'- -gUGGACaagaucacgcugCGGGGAGGccgauACCUC-CCCCu -3'
miRNA:   3'- gaGCCUGa-----------GCCCUUCU-----UGGAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 47615 0.67 0.883683
Target:  5'- uCUCGGugUCcacGGucauGCCUCcCCCCa -3'
miRNA:   3'- -GAGCCugAGc--CCuucuUGGAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 47958 0.68 0.803349
Target:  5'- -gCGGACUuccUGGGuaacacgGAGAGCCcgUGCCCCg -3'
miRNA:   3'- gaGCCUGA---GCCC-------UUCUUGGa-GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 48098 0.67 0.861911
Target:  5'- aUCGGG-UCGGuaccgcguGGAGGGCCUCggcgcacccgACCCCg -3'
miRNA:   3'- gAGCCUgAGCC--------CUUCUUGGAG----------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 50638 0.69 0.777041
Target:  5'- uCUCGGGuCUcCGGGGAGGuCCgcgguCCCCu -3'
miRNA:   3'- -GAGCCU-GA-GCCCUUCUuGGagu--GGGG- -5'
2871 5' -55.9 NC_001493.1 + 51722 0.67 0.861911
Target:  5'- aUUGGcgaGCUCGGGAcGGGCCUUgACCUUc -3'
miRNA:   3'- gAGCC---UGAGCCCUuCUUGGAG-UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 61732 0.69 0.795313
Target:  5'- --aGcGACUCGGacGAGGAGCCagagauggcgCGCCCCg -3'
miRNA:   3'- gagC-CUGAGCC--CUUCUUGGa---------GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 62391 0.66 0.921173
Target:  5'- uCUUGGguuugugaccGCcCGGu--GGACCUCGCCCCc -3'
miRNA:   3'- -GAGCC----------UGaGCCcuuCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 62421 0.69 0.748693
Target:  5'- gCUCGGGCgugUCGGGuuGAAcCCUCggcgaacgAUCCCg -3'
miRNA:   3'- -GAGCCUG---AGCCCuuCUU-GGAG--------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 66576 0.71 0.679418
Target:  5'- uUCGG-CUCGGGAuaGugC-CGCCCCc -3'
miRNA:   3'- gAGCCuGAGCCCUucUugGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 72874 0.72 0.58793
Target:  5'- -gUGGGC-CGGGAuggAGAG-CUCGCCCCu -3'
miRNA:   3'- gaGCCUGaGCCCU---UCUUgGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 74121 0.69 0.758256
Target:  5'- cCUgGGAUUCGGcaguuGAucGCCUCcACCCCg -3'
miRNA:   3'- -GAgCCUGAGCCcuu--CU--UGGAG-UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 78309 0.66 0.909605
Target:  5'- -aCGGGCgUCGuGGggGAACCUCcgaaGCauugcacgggggCCCa -3'
miRNA:   3'- gaGCCUG-AGC-CCuuCUUGGAG----UG------------GGG- -5'
2871 5' -55.9 NC_001493.1 + 82164 0.67 0.861911
Target:  5'- aCUCGGucuccAUUCGGGAGacggcguccGAACCgaUC-CCCCa -3'
miRNA:   3'- -GAGCC-----UGAGCCCUU---------CUUGG--AGuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.