miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 3117 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 3135 0.7 0.742906
Target:  5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3'
miRNA:   3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 3660 0.66 0.911994
Target:  5'- cCUCGGGCgacucaaCGGGGaucccgaacggaaggGGGAgUUCACCgCCg -3'
miRNA:   3'- -GAGCCUGa------GCCCU---------------UCUUgGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 4133 0.67 0.876641
Target:  5'- cCUCgGGAC-CGGGGugGGAACaacgaACCCCc -3'
miRNA:   3'- -GAG-CCUGaGCCCU--UCUUGgag--UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 5537 0.66 0.915507
Target:  5'- -cCGGACUugggCGGGAGGAGCga-GCCgCg -3'
miRNA:   3'- gaGCCUGA----GCCCUUCUUGgagUGGgG- -5'
2871 5' -55.9 NC_001493.1 + 5667 0.66 0.897101
Target:  5'- gUCGGAgaCGGGAgaguacaucGGAGCCggguUCACCg- -3'
miRNA:   3'- gAGCCUgaGCCCU---------UCUUGG----AGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 7707 0.75 0.425102
Target:  5'- gUCGaGACUCGGuGAGGGauggacACCggUCGCCCCg -3'
miRNA:   3'- gAGC-CUGAGCC-CUUCU------UGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 7991 0.67 0.882292
Target:  5'- -aCGGGuugaacuUUCGGGAAGAaggggaucgcuagGCCUCGacUCCCg -3'
miRNA:   3'- gaGCCU-------GAGCCCUUCU-------------UGGAGU--GGGG- -5'
2871 5' -55.9 NC_001493.1 + 11051 0.67 0.861911
Target:  5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3'
miRNA:   3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 12696 0.71 0.648971
Target:  5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3'
miRNA:   3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 12945 0.71 0.6895
Target:  5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3'
miRNA:   3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5'
2871 5' -55.9 NC_001493.1 + 14905 0.66 0.921173
Target:  5'- --gGGGCagggGGGAAGGGCUUCGCCg- -3'
miRNA:   3'- gagCCUGag--CCCUUCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 17862 0.69 0.758256
Target:  5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3'
miRNA:   3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 18124 0.77 0.342699
Target:  5'- -gCGGACagCGGGGAGAACCcgaaaaauauaUUGCCCCg -3'
miRNA:   3'- gaGCCUGa-GCCCUUCUUGG-----------AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 18585 0.67 0.869381
Target:  5'- --aGGGucCUcCGGGAAGggUuccucagggCUCGCCCCg -3'
miRNA:   3'- gagCCU--GA-GCCCUUCuuG---------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 19167 0.66 0.915507
Target:  5'- gCUCGcGGCgCGGGAggugGGGAUCggUCGCUCCc -3'
miRNA:   3'- -GAGC-CUGaGCCCU----UCUUGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 19872 0.7 0.72829
Target:  5'- -cCGGACUCaaGGGGuuccuccAGAugUUCAUCCCc -3'
miRNA:   3'- gaGCCUGAG--CCCU-------UCUugGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 27054 0.67 0.854234
Target:  5'- aCUCGGACUCGGacucGGACuCUUcCUCCu -3'
miRNA:   3'- -GAGCCUGAGCCcuu-CUUG-GAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 27624 0.69 0.795313
Target:  5'- -gCGGGCUCGGGAucGGCCccgaUACCaCCg -3'
miRNA:   3'- gaGCCUGAGCCCUucUUGGa---GUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 29003 0.66 0.915507
Target:  5'- cCUCGGACUUGGuaaccGAGCuCUUACCgagCCg -3'
miRNA:   3'- -GAGCCUGAGCCcuu--CUUG-GAGUGG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.