miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 48098 0.67 0.861911
Target:  5'- aUCGGG-UCGGuaccgcguGGAGGGCCUCggcgcacccgACCCCg -3'
miRNA:   3'- gAGCCUgAGCC--------CUUCUUGGAG----------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 74121 0.69 0.758256
Target:  5'- cCUgGGAUUCGGcaguuGAucGCCUCcACCCCg -3'
miRNA:   3'- -GAgCCUGAGCCcuu--CU--UGGAG-UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 27624 0.69 0.795313
Target:  5'- -gCGGGCUCGGGAucGGCCccgaUACCaCCg -3'
miRNA:   3'- gaGCCUGAGCCCUucUUGGa---GUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 95953 0.68 0.810387
Target:  5'- -aCGGACUgggUGGaGAAGAACCgugccuggacguggUCACuCCCg -3'
miRNA:   3'- gaGCCUGA---GCC-CUUCUUGG--------------AGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 106273 0.68 0.813
Target:  5'- -aCGGGCUCaGuGA--AACCUUGCCCCu -3'
miRNA:   3'- gaGCCUGAGcC-CUucUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 96400 0.68 0.830036
Target:  5'- gUCGacuacuCUCGaGGGAGAACUUCAUCCg -3'
miRNA:   3'- gAGCcu----GAGC-CCUUCUUGGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 92803 0.68 0.830036
Target:  5'- aUCGGgacGCUCcGGucGAG-CUCGCCCCa -3'
miRNA:   3'- gAGCC---UGAGcCCuuCUUgGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 11051 0.67 0.861911
Target:  5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3'
miRNA:   3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 126606 0.67 0.861911
Target:  5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3'
miRNA:   3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 118690 0.7 0.742906
Target:  5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3'
miRNA:   3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 3135 0.7 0.742906
Target:  5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3'
miRNA:   3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 66576 0.71 0.679418
Target:  5'- uUCGG-CUCGGGAuaGugC-CGCCCCc -3'
miRNA:   3'- gAGCCuGAGCCCUucUugGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 133679 0.77 0.342699
Target:  5'- -gCGGACagCGGGGAGAACCcgaaaaauauaUUGCCCCg -3'
miRNA:   3'- gaGCCUGa-GCCCUUCUUGG-----------AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 39876 0.76 0.382426
Target:  5'- aUCGGA-UCGGGggGuuuuucAACCUCACCgCCu -3'
miRNA:   3'- gAGCCUgAGCCCuuC------UUGGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 7707 0.75 0.425102
Target:  5'- gUCGaGACUCGGuGAGGGauggacACCggUCGCCCCg -3'
miRNA:   3'- gAGC-CUGAGCC-CUUCU------UGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 123261 0.75 0.425102
Target:  5'- gUCGaGACUCGGuGAGGGauggacACCggUCGCCCCg -3'
miRNA:   3'- gAGC-CUGAGCC-CUUCU------UGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 82310 0.73 0.537857
Target:  5'- aUCGGAuCUuugacgaguaCGGGAAGAAUuacacacucgcgCUCGCCCCg -3'
miRNA:   3'- gAGCCU-GA----------GCCCUUCUUG------------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 72874 0.72 0.58793
Target:  5'- -gUGGGC-CGGGAuggAGAG-CUCGCCCCu -3'
miRNA:   3'- gaGCCUGaGCCCU---UCUUgGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 12696 0.71 0.648971
Target:  5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3'
miRNA:   3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 128250 0.71 0.648971
Target:  5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3'
miRNA:   3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.