miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 118671 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 82164 0.67 0.861911
Target:  5'- aCUCGGucuccAUUCGGGAGacggcguccGAACCgaUC-CCCCa -3'
miRNA:   3'- -GAGCC-----UGAGCCCUU---------CUUGG--AGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 134140 0.67 0.869381
Target:  5'- --aGGGucCUcCGGGAAGggUuccucagggCUCGCCCCg -3'
miRNA:   3'- gagCCU--GA-GCCCUUCuuG---------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 14905 0.66 0.921173
Target:  5'- --gGGGCagggGGGAAGGGCUUCGCCg- -3'
miRNA:   3'- gagCCUGag--CCCUUCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 97147 0.72 0.602127
Target:  5'- uUCGGACacgggGGGGAuuacaacccaacaccGAACCUCACCCa -3'
miRNA:   3'- gAGCCUGag---CCCUU---------------CUUGGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 91848 0.71 0.648971
Target:  5'- ----uGCUCGGGggGGACCcggCGCCCa -3'
miRNA:   3'- gagccUGAGCCCuuCUUGGa--GUGGGg -5'
2871 5' -55.9 NC_001493.1 + 128499 0.71 0.6895
Target:  5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3'
miRNA:   3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5'
2871 5' -55.9 NC_001493.1 + 12945 0.71 0.6895
Target:  5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3'
miRNA:   3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5'
2871 5' -55.9 NC_001493.1 + 133416 0.69 0.758256
Target:  5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3'
miRNA:   3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 27054 0.67 0.854234
Target:  5'- aCUCGGACUCGGacucGGACuCUUcCUCCu -3'
miRNA:   3'- -GAGCCUGAGCCcuu-CUUG-GAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 50638 0.69 0.777041
Target:  5'- uCUCGGGuCUcCGGGGAGGuCCgcgguCCCCu -3'
miRNA:   3'- -GAGCCU-GA-GCCCUUCUuGGagu--GGGG- -5'
2871 5' -55.9 NC_001493.1 + 62421 0.69 0.748693
Target:  5'- gCUCGGGCgugUCGGGuuGAAcCCUCggcgaacgAUCCCg -3'
miRNA:   3'- -GAGCCUG---AGCCCuuCUU-GGAG--------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 3117 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 61732 0.69 0.795313
Target:  5'- --aGcGACUCGGacGAGGAGCCagagauggcgCGCCCCg -3'
miRNA:   3'- gagC-CUGAGCC--CUUCUUGGa---------GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 88836 0.8 0.241892
Target:  5'- --gGGAUUCGGGGAGAcCCUCAauauCCCCg -3'
miRNA:   3'- gagCCUGAGCCCUUCUuGGAGU----GGGG- -5'
2871 5' -55.9 NC_001493.1 + 19872 0.7 0.72829
Target:  5'- -cCGGACUCaaGGGGuuccuccAGAugUUCAUCCCc -3'
miRNA:   3'- gaGCCUGAG--CCCU-------UCUugGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 47958 0.68 0.803349
Target:  5'- -gCGGACUuccUGGGuaacacgGAGAGCCcgUGCCCCg -3'
miRNA:   3'- gaGCCUGA---GCCC-------UUCUUGGa-GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 103372 0.67 0.861911
Target:  5'- aUCuGAUcaCGGGggGaAACC-CGCCCCa -3'
miRNA:   3'- gAGcCUGa-GCCCuuC-UUGGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 34087 0.74 0.48933
Target:  5'- gCUCgGGGCUCGGGAguuGGGACacgCuCCCCg -3'
miRNA:   3'- -GAG-CCUGAGCCCU---UCUUGga-GuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 112979 0.71 0.669296
Target:  5'- -aUGGGCUCgGGGAAGGAUCaCGCCUg -3'
miRNA:   3'- gaGCCUGAG-CCCUUCUUGGaGUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.