miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 3117 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 118671 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 88836 0.8 0.241892
Target:  5'- --gGGAUUCGGGGAGAcCCUCAauauCCCCg -3'
miRNA:   3'- gagCCUGAGCCCUUCUuGGAGU----GGGG- -5'
2871 5' -55.9 NC_001493.1 + 18124 0.77 0.342699
Target:  5'- -gCGGACagCGGGGAGAACCcgaaaaauauaUUGCCCCg -3'
miRNA:   3'- gaGCCUGa-GCCCUUCUUGG-----------AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 133679 0.77 0.342699
Target:  5'- -gCGGACagCGGGGAGAACCcgaaaaauauaUUGCCCCg -3'
miRNA:   3'- gaGCCUGa-GCCCUUCUUGG-----------AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 39876 0.76 0.382426
Target:  5'- aUCGGA-UCGGGggGuuuuucAACCUCACCgCCu -3'
miRNA:   3'- gAGCCUgAGCCCuuC------UUGGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 123261 0.75 0.425102
Target:  5'- gUCGaGACUCGGuGAGGGauggacACCggUCGCCCCg -3'
miRNA:   3'- gAGC-CUGAGCC-CUUCU------UGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 7707 0.75 0.425102
Target:  5'- gUCGaGACUCGGuGAGGGauggacACCggUCGCCCCg -3'
miRNA:   3'- gAGC-CUGAGCC-CUUCU------UGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 34087 0.74 0.48933
Target:  5'- gCUCgGGGCUCGGGAguuGGGACacgCuCCCCg -3'
miRNA:   3'- -GAG-CCUGAGCCCU---UCUUGga-GuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 82310 0.73 0.537857
Target:  5'- aUCGGAuCUuugacgaguaCGGGAAGAAUuacacacucgcgCUCGCCCCg -3'
miRNA:   3'- gAGCCU-GA----------GCCCUUCUUG------------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 72874 0.72 0.58793
Target:  5'- -gUGGGC-CGGGAuggAGAG-CUCGCCCCu -3'
miRNA:   3'- gaGCCUGaGCCCU---UCUUgGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 97147 0.72 0.602127
Target:  5'- uUCGGACacgggGGGGAuuacaacccaacaccGAACCUCACCCa -3'
miRNA:   3'- gAGCCUGag---CCCUU---------------CUUGGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 128250 0.71 0.648971
Target:  5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3'
miRNA:   3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 12696 0.71 0.648971
Target:  5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3'
miRNA:   3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 91848 0.71 0.648971
Target:  5'- ----uGCUCGGGggGGACCcggCGCCCa -3'
miRNA:   3'- gagccUGAGCCCuuCUUGGa--GUGGGg -5'
2871 5' -55.9 NC_001493.1 + 112979 0.71 0.669296
Target:  5'- -aUGGGCUCgGGGAAGGAUCaCGCCUg -3'
miRNA:   3'- gaGCCUGAG-CCCUUCUUGGaGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 66576 0.71 0.679418
Target:  5'- uUCGG-CUCGGGAuaGugC-CGCCCCc -3'
miRNA:   3'- gAGCCuGAGCCCUucUugGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 128499 0.71 0.6895
Target:  5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3'
miRNA:   3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5'
2871 5' -55.9 NC_001493.1 + 12945 0.71 0.6895
Target:  5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3'
miRNA:   3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5'
2871 5' -55.9 NC_001493.1 + 19872 0.7 0.72829
Target:  5'- -cCGGACUCaaGGGGuuccuccAGAugUUCAUCCCc -3'
miRNA:   3'- gaGCCUGAG--CCCU-------UCUugGAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.