Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2871 | 5' | -55.9 | NC_001493.1 | + | 3135 | 0.7 | 0.742906 |
Target: 5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3' miRNA: 3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 118690 | 0.7 | 0.742906 |
Target: 5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3' miRNA: 3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 62421 | 0.69 | 0.748693 |
Target: 5'- gCUCGGGCgugUCGGGuuGAAcCCUCggcgaacgAUCCCg -3' miRNA: 3'- -GAGCCUG---AGCCCuuCUU-GGAG--------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 133416 | 0.69 | 0.758256 |
Target: 5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3' miRNA: 3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 74121 | 0.69 | 0.758256 |
Target: 5'- cCUgGGAUUCGGcaguuGAucGCCUCcACCCCg -3' miRNA: 3'- -GAgCCUGAGCCcuu--CU--UGGAG-UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 17862 | 0.69 | 0.758256 |
Target: 5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3' miRNA: 3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 50638 | 0.69 | 0.777041 |
Target: 5'- uCUCGGGuCUcCGGGGAGGuCCgcgguCCCCu -3' miRNA: 3'- -GAGCCU-GA-GCCCUUCUuGGagu--GGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 61732 | 0.69 | 0.795313 |
Target: 5'- --aGcGACUCGGacGAGGAGCCagagauggcgCGCCCCg -3' miRNA: 3'- gagC-CUGAGCC--CUUCUUGGa---------GUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 27624 | 0.69 | 0.795313 |
Target: 5'- -gCGGGCUCGGGAucGGCCccgaUACCaCCg -3' miRNA: 3'- gaGCCUGAGCCCUucUUGGa---GUGG-GG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 47958 | 0.68 | 0.803349 |
Target: 5'- -gCGGACUuccUGGGuaacacgGAGAGCCcgUGCCCCg -3' miRNA: 3'- gaGCCUGA---GCCC-------UUCUUGGa-GUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 95953 | 0.68 | 0.810387 |
Target: 5'- -aCGGACUgggUGGaGAAGAACCgugccuggacguggUCACuCCCg -3' miRNA: 3'- gaGCCUGA---GCC-CUUCUUGG--------------AGUG-GGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 106273 | 0.68 | 0.813 |
Target: 5'- -aCGGGCUCaGuGA--AACCUUGCCCCu -3' miRNA: 3'- gaGCCUGAGcC-CUucUUGGAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 92803 | 0.68 | 0.830036 |
Target: 5'- aUCGGgacGCUCcGGucGAG-CUCGCCCCa -3' miRNA: 3'- gAGCC---UGAGcCCuuCUUgGAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 96400 | 0.68 | 0.830036 |
Target: 5'- gUCGacuacuCUCGaGGGAGAACUUCAUCCg -3' miRNA: 3'- gAGCcu----GAGC-CCUUCUUGGAGUGGGg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 27054 | 0.67 | 0.854234 |
Target: 5'- aCUCGGACUCGGacucGGACuCUUcCUCCu -3' miRNA: 3'- -GAGCCUGAGCCcuu-CUUG-GAGuGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 82164 | 0.67 | 0.861911 |
Target: 5'- aCUCGGucuccAUUCGGGAGacggcguccGAACCgaUC-CCCCa -3' miRNA: 3'- -GAGCC-----UGAGCCCUU---------CUUGG--AGuGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 126606 | 0.67 | 0.861911 |
Target: 5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3' miRNA: 3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 11051 | 0.67 | 0.861911 |
Target: 5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3' miRNA: 3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 48098 | 0.67 | 0.861911 |
Target: 5'- aUCGGG-UCGGuaccgcguGGAGGGCCUCggcgcacccgACCCCg -3' miRNA: 3'- gAGCCUgAGCC--------CUUCUUGGAG----------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 51722 | 0.67 | 0.861911 |
Target: 5'- aUUGGcgaGCUCGGGAcGGGCCUUgACCUUc -3' miRNA: 3'- gAGCC---UGAGCCCUuCUUGGAG-UGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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