miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 47615 0.67 0.883683
Target:  5'- uCUCGGugUCcacGGucauGCCUCcCCCCa -3'
miRNA:   3'- -GAGCCugAGc--CCuucuUGGAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 7991 0.67 0.882292
Target:  5'- -aCGGGuugaacuUUCGGGAAGAaggggaucgcuagGCCUCGacUCCCg -3'
miRNA:   3'- gaGCCU-------GAGCCCUUCU-------------UGGAGU--GGGG- -5'
2871 5' -55.9 NC_001493.1 + 123545 0.67 0.882292
Target:  5'- -aCGGGuugaacuUUCGGGAAGAaggggaucgcuagGCCUCGacUCCCg -3'
miRNA:   3'- gaGCCU-------GAGCCCUUCU-------------UGGAGU--GGGG- -5'
2871 5' -55.9 NC_001493.1 + 4133 0.67 0.876641
Target:  5'- cCUCgGGAC-CGGGGugGGAACaacgaACCCCc -3'
miRNA:   3'- -GAG-CCUGaGCCCU--UCUUGgag--UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 33056 0.67 0.876641
Target:  5'- -cCGaGCUCGGGGAGGucuACaCgagcgCACCCCc -3'
miRNA:   3'- gaGCcUGAGCCCUUCU---UG-Ga----GUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 119688 0.67 0.876641
Target:  5'- cCUCgGGAC-CGGGGugGGAACaacgaACCCCc -3'
miRNA:   3'- -GAG-CCUGaGCCCU--UCUUGgag--UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 47113 0.67 0.875206
Target:  5'- -gUGGACaagaucacgcugCGGGGAGGccgauACCUC-CCCCu -3'
miRNA:   3'- gaGCCUGa-----------GCCCUUCU-----UGGAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 134140 0.67 0.869381
Target:  5'- --aGGGucCUcCGGGAAGggUuccucagggCUCGCCCCg -3'
miRNA:   3'- gagCCU--GA-GCCCUUCuuG---------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 18585 0.67 0.869381
Target:  5'- --aGGGucCUcCGGGAAGggUuccucagggCUCGCCCCg -3'
miRNA:   3'- gagCCU--GA-GCCCUUCuuG---------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 82164 0.67 0.861911
Target:  5'- aCUCGGucuccAUUCGGGAGacggcguccGAACCgaUC-CCCCa -3'
miRNA:   3'- -GAGCC-----UGAGCCCUU---------CUUGG--AGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 103372 0.67 0.861911
Target:  5'- aUCuGAUcaCGGGggGaAACC-CGCCCCa -3'
miRNA:   3'- gAGcCUGa-GCCCuuC-UUGGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 48098 0.67 0.861911
Target:  5'- aUCGGG-UCGGuaccgcguGGAGGGCCUCggcgcacccgACCCCg -3'
miRNA:   3'- gAGCCUgAGCC--------CUUCUUGGAG----------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 126606 0.67 0.861911
Target:  5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3'
miRNA:   3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 11051 0.67 0.861911
Target:  5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3'
miRNA:   3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 51722 0.67 0.861911
Target:  5'- aUUGGcgaGCUCGGGAcGGGCCUUgACCUUc -3'
miRNA:   3'- gAGCC---UGAGCCCUuCUUGGAG-UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 27054 0.67 0.854234
Target:  5'- aCUCGGACUCGGacucGGACuCUUcCUCCu -3'
miRNA:   3'- -GAGCCUGAGCCcuu-CUUG-GAGuGGGG- -5'
2871 5' -55.9 NC_001493.1 + 96400 0.68 0.830036
Target:  5'- gUCGacuacuCUCGaGGGAGAACUUCAUCCg -3'
miRNA:   3'- gAGCcu----GAGC-CCUUCUUGGAGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 92803 0.68 0.830036
Target:  5'- aUCGGgacGCUCcGGucGAG-CUCGCCCCa -3'
miRNA:   3'- gAGCC---UGAGcCCuuCUUgGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 106273 0.68 0.813
Target:  5'- -aCGGGCUCaGuGA--AACCUUGCCCCu -3'
miRNA:   3'- gaGCCUGAGcC-CUucUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 95953 0.68 0.810387
Target:  5'- -aCGGACUgggUGGaGAAGAACCgugccuggacguggUCACuCCCg -3'
miRNA:   3'- gaGCCUGA---GCC-CUUCUUGG--------------AGUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.