Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2871 | 5' | -55.9 | NC_001493.1 | + | 47958 | 0.68 | 0.803349 |
Target: 5'- -gCGGACUuccUGGGuaacacgGAGAGCCcgUGCCCCg -3' miRNA: 3'- gaGCCUGA---GCCC-------UUCUUGGa-GUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 61732 | 0.69 | 0.795313 |
Target: 5'- --aGcGACUCGGacGAGGAGCCagagauggcgCGCCCCg -3' miRNA: 3'- gagC-CUGAGCC--CUUCUUGGa---------GUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 27624 | 0.69 | 0.795313 |
Target: 5'- -gCGGGCUCGGGAucGGCCccgaUACCaCCg -3' miRNA: 3'- gaGCCUGAGCCCUucUUGGa---GUGG-GG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 50638 | 0.69 | 0.777041 |
Target: 5'- uCUCGGGuCUcCGGGGAGGuCCgcgguCCCCu -3' miRNA: 3'- -GAGCCU-GA-GCCCUUCUuGGagu--GGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 17862 | 0.69 | 0.758256 |
Target: 5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3' miRNA: 3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 133416 | 0.69 | 0.758256 |
Target: 5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3' miRNA: 3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 74121 | 0.69 | 0.758256 |
Target: 5'- cCUgGGAUUCGGcaguuGAucGCCUCcACCCCg -3' miRNA: 3'- -GAgCCUGAGCCcuu--CU--UGGAG-UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 62421 | 0.69 | 0.748693 |
Target: 5'- gCUCGGGCgugUCGGGuuGAAcCCUCggcgaacgAUCCCg -3' miRNA: 3'- -GAGCCUG---AGCCCuuCUU-GGAG--------UGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 3135 | 0.7 | 0.742906 |
Target: 5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3' miRNA: 3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 118690 | 0.7 | 0.742906 |
Target: 5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3' miRNA: 3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 19872 | 0.7 | 0.72829 |
Target: 5'- -cCGGACUCaaGGGGuuccuccAGAugUUCAUCCCc -3' miRNA: 3'- gaGCCUGAG--CCCU-------UCUugGAGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 12945 | 0.71 | 0.6895 |
Target: 5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3' miRNA: 3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 128499 | 0.71 | 0.6895 |
Target: 5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3' miRNA: 3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 66576 | 0.71 | 0.679418 |
Target: 5'- uUCGG-CUCGGGAuaGugC-CGCCCCc -3' miRNA: 3'- gAGCCuGAGCCCUucUugGaGUGGGG- -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 112979 | 0.71 | 0.669296 |
Target: 5'- -aUGGGCUCgGGGAAGGAUCaCGCCUg -3' miRNA: 3'- gaGCCUGAG-CCCUUCUUGGaGUGGGg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 12696 | 0.71 | 0.648971 |
Target: 5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3' miRNA: 3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 91848 | 0.71 | 0.648971 |
Target: 5'- ----uGCUCGGGggGGACCcggCGCCCa -3' miRNA: 3'- gagccUGAGCCCuuCUUGGa--GUGGGg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 128250 | 0.71 | 0.648971 |
Target: 5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3' miRNA: 3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 97147 | 0.72 | 0.602127 |
Target: 5'- uUCGGACacgggGGGGAuuacaacccaacaccGAACCUCACCCa -3' miRNA: 3'- gAGCCUGag---CCCUU---------------CUUGGAGUGGGg -5' |
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2871 | 5' | -55.9 | NC_001493.1 | + | 72874 | 0.72 | 0.58793 |
Target: 5'- -gUGGGC-CGGGAuggAGAG-CUCGCCCCu -3' miRNA: 3'- gaGCCUGaGCCCU---UCUUgGAGUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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