miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2871 5' -55.9 NC_001493.1 + 134140 0.67 0.869381
Target:  5'- --aGGGucCUcCGGGAAGggUuccucagggCUCGCCCCg -3'
miRNA:   3'- gagCCU--GA-GCCCUUCuuG---------GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 133679 0.77 0.342699
Target:  5'- -gCGGACagCGGGGAGAACCcgaaaaauauaUUGCCCCg -3'
miRNA:   3'- gaGCCUGa-GCCCUUCUUGG-----------AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 133416 0.69 0.758256
Target:  5'- -aCGGAC-CGGGcGAGAcgaugACCUCguucugguACCCCg -3'
miRNA:   3'- gaGCCUGaGCCC-UUCU-----UGGAG--------UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 130459 0.66 0.921173
Target:  5'- --gGGGCagggGGGAAGGGCUUCGCCg- -3'
miRNA:   3'- gagCCUGag--CCCUUCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 128499 0.71 0.6895
Target:  5'- -gUGGAgaacCUCGGGAguAGAGCCUCcguCCCg -3'
miRNA:   3'- gaGCCU----GAGCCCU--UCUUGGAGu--GGGg -5'
2871 5' -55.9 NC_001493.1 + 128250 0.71 0.648971
Target:  5'- -cCGGACgcgaccCGGGAgucucccacgggGGAGCCUCACCg- -3'
miRNA:   3'- gaGCCUGa-----GCCCU------------UCUUGGAGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 126606 0.67 0.861911
Target:  5'- --aGGGCUCgacgacccguGGGAcGGACgCUCACaCCCa -3'
miRNA:   3'- gagCCUGAG----------CCCUuCUUG-GAGUG-GGG- -5'
2871 5' -55.9 NC_001493.1 + 123545 0.67 0.882292
Target:  5'- -aCGGGuugaacuUUCGGGAAGAaggggaucgcuagGCCUCGacUCCCg -3'
miRNA:   3'- gaGCCU-------GAGCCCUUCU-------------UGGAGU--GGGG- -5'
2871 5' -55.9 NC_001493.1 + 123261 0.75 0.425102
Target:  5'- gUCGaGACUCGGuGAGGGauggacACCggUCGCCCCg -3'
miRNA:   3'- gAGC-CUGAGCC-CUUCU------UGG--AGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 121222 0.66 0.897101
Target:  5'- gUCGGAgaCGGGAgaguacaucGGAGCCggguUCACCg- -3'
miRNA:   3'- gAGCCUgaGCCCU---------UCUUGG----AGUGGgg -5'
2871 5' -55.9 NC_001493.1 + 121092 0.66 0.915507
Target:  5'- -cCGGACUugggCGGGAGGAGCga-GCCgCg -3'
miRNA:   3'- gaGCCUGA----GCCCUUCUUGgagUGGgG- -5'
2871 5' -55.9 NC_001493.1 + 119688 0.67 0.876641
Target:  5'- cCUCgGGAC-CGGGGugGGAACaacgaACCCCc -3'
miRNA:   3'- -GAG-CCUGaGCCCU--UCUUGgag--UGGGG- -5'
2871 5' -55.9 NC_001493.1 + 119214 0.66 0.911994
Target:  5'- cCUCGGGCgacucaaCGGGGaucccgaacggaaggGGGAgUUCACCgCCg -3'
miRNA:   3'- -GAGCCUGa------GCCCU---------------UCUUgGAGUGG-GG- -5'
2871 5' -55.9 NC_001493.1 + 118690 0.7 0.742906
Target:  5'- cCUCGGACUCGGcGuccacauccaucgcaGAGucGACaCUCGCUCCc -3'
miRNA:   3'- -GAGCCUGAGCC-C---------------UUC--UUG-GAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 118671 1.11 0.00223
Target:  5'- cCUCGGACUCGGGAAGAACCUCACCCCc -3'
miRNA:   3'- -GAGCCUGAGCCCUUCUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 112979 0.71 0.669296
Target:  5'- -aUGGGCUCgGGGAAGGAUCaCGCCUg -3'
miRNA:   3'- gaGCCUGAG-CCCUUCUUGGaGUGGGg -5'
2871 5' -55.9 NC_001493.1 + 112564 0.66 0.903469
Target:  5'- cCUCGauCUCGGucGGGAACCUCACaCCg -3'
miRNA:   3'- -GAGCcuGAGCCc-UUCUUGGAGUGgGG- -5'
2871 5' -55.9 NC_001493.1 + 106273 0.68 0.813
Target:  5'- -aCGGGCUCaGuGA--AACCUUGCCCCu -3'
miRNA:   3'- gaGCCUGAGcC-CUucUUGGAGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 103372 0.67 0.861911
Target:  5'- aUCuGAUcaCGGGggGaAACC-CGCCCCa -3'
miRNA:   3'- gAGcCUGa-GCCCuuC-UUGGaGUGGGG- -5'
2871 5' -55.9 NC_001493.1 + 97147 0.72 0.602127
Target:  5'- uUCGGACacgggGGGGAuuacaacccaacaccGAACCUCACCCa -3'
miRNA:   3'- gAGCCUGag---CCCUU---------------CUUGGAGUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.