miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2872 5' -59.9 NC_001493.1 + 18590 0.66 0.761861
Target:  5'- cCGCGaggGUCCUccgggaaggGUUCcucagGGCUCGCCCCg -3'
miRNA:   3'- uGUGCg--CAGGG---------CAAGa----CUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 134145 0.66 0.761861
Target:  5'- cCGCGaggGUCCUccgggaaggGUUCcucagGGCUCGCCCCg -3'
miRNA:   3'- uGUGCg--CAGGG---------CAAGa----CUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 12339 0.66 0.761861
Target:  5'- cGCACcuCGUCCCGguccaccaUCUauuCCCGCCUCc -3'
miRNA:   3'- -UGUGc-GCAGGGCa-------AGAcu-GGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 127893 0.66 0.761861
Target:  5'- cGCACcuCGUCCCGguccaccaUCUauuCCCGCCUCc -3'
miRNA:   3'- -UGUGc-GCAGGGCa-------AGAcu-GGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 14156 0.66 0.761861
Target:  5'- -gACGCGcCCCGggUgacgaccucgUGACCCugGCCCUc -3'
miRNA:   3'- ugUGCGCaGGGCaaG----------ACUGGG--CGGGG- -5'
2872 5' -59.9 NC_001493.1 + 35633 0.66 0.752574
Target:  5'- -gGCGCGUCCCGgguuUCUugGACgCGCgCa -3'
miRNA:   3'- ugUGCGCAGGGCa---AGA--CUGgGCGgGg -5'
2872 5' -59.9 NC_001493.1 + 129737 0.66 0.736561
Target:  5'- -aGCGUuUCCCGUgaauucacacgugugGGCCCGCaCCCg -3'
miRNA:   3'- ugUGCGcAGGGCAaga------------CUGGGCG-GGG- -5'
2872 5' -59.9 NC_001493.1 + 14183 0.66 0.736561
Target:  5'- -aGCGUuUCCCGUgaauucacacgugugGGCCCGCaCCCg -3'
miRNA:   3'- ugUGCGcAGGGCAaga------------CUGGGCG-GGG- -5'
2872 5' -59.9 NC_001493.1 + 113832 0.66 0.723186
Target:  5'- cGCAgGUGcCCCucGUUCUcGACuucggauaccaguCCGCCCCg -3'
miRNA:   3'- -UGUgCGCaGGG--CAAGA-CUG-------------GGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 129114 0.66 0.71451
Target:  5'- gAC-CGCGguggagaggCCCGagaCcGACCCGUCCCg -3'
miRNA:   3'- -UGuGCGCa--------GGGCaa-GaCUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 27620 0.66 0.71451
Target:  5'- cCGCGCGggCUCGg---GAUCgGCCCCg -3'
miRNA:   3'- uGUGCGCa-GGGCaagaCUGGgCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 13560 0.66 0.71451
Target:  5'- gAC-CGCGguggagaggCCCGagaCcGACCCGUCCCg -3'
miRNA:   3'- -UGuGCGCa--------GGGCaa-GaCUGGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 126539 0.67 0.704808
Target:  5'- uGCGC-CGUCUCGUUCU---UCGCCCUg -3'
miRNA:   3'- -UGUGcGCAGGGCAAGAcugGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 10984 0.67 0.704808
Target:  5'- uGCGC-CGUCUCGUUCU---UCGCCCUg -3'
miRNA:   3'- -UGUGcGCAGGGCAAGAcugGGCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 81120 0.67 0.685237
Target:  5'- cACACGCGuacaucacgaccUCCCcc-CUGGCCCGUagcuuaCCCa -3'
miRNA:   3'- -UGUGCGC------------AGGGcaaGACUGGGCG------GGG- -5'
2872 5' -59.9 NC_001493.1 + 30315 0.67 0.685237
Target:  5'- gACACGauCGcCCCG-UCcGACCCGauccCCCCg -3'
miRNA:   3'- -UGUGC--GCaGGGCaAGaCUGGGC----GGGG- -5'
2872 5' -59.9 NC_001493.1 + 126659 0.67 0.685237
Target:  5'- gGCGCGCaUCUCGUggUCUGAagugagCGCCCUg -3'
miRNA:   3'- -UGUGCGcAGGGCA--AGACUgg----GCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 11105 0.67 0.685237
Target:  5'- gGCGCGCaUCUCGUggUCUGAagugagCGCCCUg -3'
miRNA:   3'- -UGUGCGcAGGGCA--AGACUgg----GCGGGG- -5'
2872 5' -59.9 NC_001493.1 + 107226 0.67 0.66451
Target:  5'- aGCGgGCGcCCCGgcggUC-GACCUgagggcgGCCCCg -3'
miRNA:   3'- -UGUgCGCaGGGCa---AGaCUGGG-------CGGGG- -5'
2872 5' -59.9 NC_001493.1 + 32747 0.68 0.645662
Target:  5'- aACGCcCGUCCCGgucgcgaccggUCcGGCCCGagaCCCCu -3'
miRNA:   3'- -UGUGcGCAGGGCa----------AGaCUGGGC---GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.