Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2872 | 5' | -59.9 | NC_001493.1 | + | 134145 | 0.66 | 0.761861 |
Target: 5'- cCGCGaggGUCCUccgggaaggGUUCcucagGGCUCGCCCCg -3' miRNA: 3'- uGUGCg--CAGGG---------CAAGa----CUGGGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 130203 | 0.7 | 0.527712 |
Target: 5'- aACACGUGUUCUGUuucuUCUGcACCC-CCCg -3' miRNA: 3'- -UGUGCGCAGGGCA----AGAC-UGGGcGGGg -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 129737 | 0.66 | 0.736561 |
Target: 5'- -aGCGUuUCCCGUgaauucacacgugugGGCCCGCaCCCg -3' miRNA: 3'- ugUGCGcAGGGCAaga------------CUGGGCG-GGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 129711 | 0.7 | 0.518171 |
Target: 5'- -gACGCGcCCCGggUgacgaccucgUGACCCGgCCCu -3' miRNA: 3'- ugUGCGCaGGGCaaG----------ACUGGGCgGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 129114 | 0.66 | 0.71451 |
Target: 5'- gAC-CGCGguggagaggCCCGagaCcGACCCGUCCCg -3' miRNA: 3'- -UGuGCGCa--------GGGCaa-GaCUGGGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 127893 | 0.66 | 0.761861 |
Target: 5'- cGCACcuCGUCCCGguccaccaUCUauuCCCGCCUCc -3' miRNA: 3'- -UGUGc-GCAGGGCa-------AGAcu-GGGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 126659 | 0.67 | 0.685237 |
Target: 5'- gGCGCGCaUCUCGUggUCUGAagugagCGCCCUg -3' miRNA: 3'- -UGUGCGcAGGGCA--AGACUgg----GCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 126539 | 0.67 | 0.704808 |
Target: 5'- uGCGC-CGUCUCGUUCU---UCGCCCUg -3' miRNA: 3'- -UGUGcGCAGGGCAAGAcugGGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 126346 | 0.69 | 0.537318 |
Target: 5'- -gGCGCGUCCCGagagUCUcGACCgCGgaggaCCCg -3' miRNA: 3'- ugUGCGCAGGGCa---AGA-CUGG-GCg----GGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 119961 | 1.1 | 0.001113 |
Target: 5'- gACACGCGUCCCGUUCUGACCCGCCCCc -3' miRNA: 3'- -UGUGCGCAGGGCAAGACUGGGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 119012 | 0.7 | 0.518171 |
Target: 5'- gACugGCGUCCCGa---GGagCGCCCCa -3' miRNA: 3'- -UGugCGCAGGGCaagaCUggGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 113832 | 0.66 | 0.723186 |
Target: 5'- cGCAgGUGcCCCucGUUCUcGACuucggauaccaguCCGCCCCg -3' miRNA: 3'- -UGUgCGCaGGG--CAAGA-CUG-------------GGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 107226 | 0.67 | 0.66451 |
Target: 5'- aGCGgGCGcCCCGgcggUC-GACCUgagggcgGCCCCg -3' miRNA: 3'- -UGUgCGCaGGGCa---AGaCUGGG-------CGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 88104 | 0.68 | 0.635724 |
Target: 5'- gGCGC-CGaUCCCGUgagccaugaccUCgauaaacugGACCUGCCCCc -3' miRNA: 3'- -UGUGcGC-AGGGCA-----------AGa--------CUGGGCGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 81120 | 0.67 | 0.685237 |
Target: 5'- cACACGCGuacaucacgaccUCCCcc-CUGGCCCGUagcuuaCCCa -3' miRNA: 3'- -UGUGCGC------------AGGGcaaGACUGGGCG------GGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 60437 | 0.68 | 0.625783 |
Target: 5'- -gGCGCGaUCCCcagUCUGACgCGUaCCCa -3' miRNA: 3'- ugUGCGC-AGGGca-AGACUGgGCG-GGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 55892 | 0.68 | 0.635724 |
Target: 5'- cCACGCGcUCuCCGUUagcGACCUcaccaGCCCCc -3' miRNA: 3'- uGUGCGC-AG-GGCAAga-CUGGG-----CGGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 35633 | 0.66 | 0.752574 |
Target: 5'- -gGCGCGUCCCGgguuUCUugGACgCGCgCa -3' miRNA: 3'- ugUGCGCAGGGCa---AGA--CUGgGCGgGg -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 32747 | 0.68 | 0.645662 |
Target: 5'- aACGCcCGUCCCGgucgcgaccggUCcGGCCCGagaCCCCu -3' miRNA: 3'- -UGUGcGCAGGGCa----------AGaCUGGGC---GGGG- -5' |
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2872 | 5' | -59.9 | NC_001493.1 | + | 30315 | 0.67 | 0.685237 |
Target: 5'- gACACGauCGcCCCG-UCcGACCCGauccCCCCg -3' miRNA: 3'- -UGUGC--GCaGGGCaAGaCUGGGC----GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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