Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28724 | 3' | -53.6 | NC_006146.1 | + | 67066 | 0.66 | 0.966263 |
Target: 5'- cACcuCUGCCAGAcgGGCcgagaagggGUCGGCGGCc -3' miRNA: 3'- -UGucGACGGUCUa-CCG---------UAGCUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 53166 | 0.7 | 0.853937 |
Target: 5'- uGCGGCggugGCCGGAaGGC-UCGGCcuCGg -3' miRNA: 3'- -UGUCGa---CGGUCUaCCGuAGCUGuuGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 55765 | 0.67 | 0.953145 |
Target: 5'- gGCGGCggGCCAGG-GGCAgCGAggccaccacgcuggcCAGCGa -3' miRNA: 3'- -UGUCGa-CGGUCUaCCGUaGCU---------------GUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 84878 | 0.68 | 0.927685 |
Target: 5'- aGCGGCU-CCAG-UGGCAgCGACAcugGCa -3' miRNA: 3'- -UGUCGAcGGUCuACCGUaGCUGU---UGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 165804 | 0.68 | 0.927685 |
Target: 5'- cACGGCcgGCUAGGggggcgucccUGGCcgCGugGACGc -3' miRNA: 3'- -UGUCGa-CGGUCU----------ACCGuaGCugUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 123700 | 0.67 | 0.93294 |
Target: 5'- -aGGCgGCCAGGggccUGGCGcucggggCGGCGGCGg -3' miRNA: 3'- ugUCGaCGGUCU----ACCGUa------GCUGUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 112055 | 0.67 | 0.947226 |
Target: 5'- -gGGCUGCCGGccuugacGGCGcagUUGACGAUGg -3' miRNA: 3'- ugUCGACGGUCua-----CCGU---AGCUGUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 60478 | 0.67 | 0.947226 |
Target: 5'- aGCGGUgagagGCCGGggGGCcagcuccccCGACGGCGa -3' miRNA: 3'- -UGUCGa----CGGUCuaCCGua-------GCUGUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 49176 | 0.66 | 0.955539 |
Target: 5'- aGCAGUUcCCGGAUGGUA-CGGCGGg- -3' miRNA: 3'- -UGUCGAcGGUCUACCGUaGCUGUUgc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 29760 | 0.68 | 0.904195 |
Target: 5'- cGCAGCUGCUGGAa-GCAUCgGGCAAa- -3' miRNA: 3'- -UGUCGACGGUCUacCGUAG-CUGUUgc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 104421 | 0.69 | 0.897711 |
Target: 5'- cCGGCUGCCgcauaccuacaAGGUGGaCAggGGCGGCGc -3' miRNA: 3'- uGUCGACGG-----------UCUACC-GUagCUGUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 109129 | 0.69 | 0.88403 |
Target: 5'- -aGGCUGCCGucuugGGCAUCaGCAGCa -3' miRNA: 3'- ugUCGACGGUcua--CCGUAGcUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 27356 | 0.77 | 0.471432 |
Target: 5'- cGCGGCaagGCCGGggGGCGUCugGACAGCa -3' miRNA: 3'- -UGUCGa--CGGUCuaCCGUAG--CUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 114382 | 0.74 | 0.63322 |
Target: 5'- uCAGCUGCU-GAUGGCcggCGACGACc -3' miRNA: 3'- uGUCGACGGuCUACCGua-GCUGUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 101853 | 0.74 | 0.653001 |
Target: 5'- -gGGCUGCCgcaccacGGGUGGCGgggCGAgGACGg -3' miRNA: 3'- ugUCGACGG-------UCUACCGUa--GCUgUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 21356 | 0.71 | 0.78428 |
Target: 5'- -gGGCUGCCGGcgGGCuuccugccggucAUCGACAuccucaACGa -3' miRNA: 3'- ugUCGACGGUCuaCCG------------UAGCUGU------UGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 72196 | 0.72 | 0.725862 |
Target: 5'- cGCGGCgGCCGGAUgGGCGggaGAcCAGCGg -3' miRNA: 3'- -UGUCGaCGGUCUA-CCGUag-CU-GUUGC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 15878 | 0.7 | 0.853937 |
Target: 5'- uACAGCgUGCCGGAgggcucgcUGGCcUCGAgcCAGCa -3' miRNA: 3'- -UGUCG-ACGGUCU--------ACCGuAGCU--GUUGc -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 116842 | 0.69 | 0.876841 |
Target: 5'- cGCGGCgGCCAGGUGGgcccugaccacCGcCGACAugGc -3' miRNA: 3'- -UGUCGaCGGUCUACC-----------GUaGCUGUugC- -5' |
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28724 | 3' | -53.6 | NC_006146.1 | + | 110275 | 0.69 | 0.88403 |
Target: 5'- uGCAGagccccguCUGCCAuGAUGGCcUCGGCGuagGCGu -3' miRNA: 3'- -UGUC--------GACGGU-CUACCGuAGCUGU---UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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